# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_BATF/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/BATF.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/BATF.fasta (Sat Feb 12 17:35:08 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.289 C 0.207 G 0.220 T 0.284


MOTIF TGACTCAW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAW   WTGAGTCA         37          0   1.7e-012   4.5e-009
#         TGACTCAT   ATGAGTCA         21          0   3.1e-007   8.0e-004
#         TGACTCAA   TTGAGTCA         16          0   1.2e-005   3.1e-002

letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 4.5e-009
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.432432 0.000000 0.000000 0.567568


MOTIF AAATGACT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGACT   AGTCATTT         13          0   1.0e-004   2.5e-001
#         AAATGACT   AGTCATTT         13          0   1.0e-004   2.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.5e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACAGTCAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGTCAT   ATGACTGT          8          0   3.7e-003   8.8e+000
#         ACAGTCAT   ATGACTGT          8          0   3.7e-003   8.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.8e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACTCAGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCAGCA   TGCTGAGT          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGAGTAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAGTAA   TTACTCAT          5          0   3.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds