# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ATF7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ATF7.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ATF7.fasta (Sat Feb 12 17:35:01 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:50 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.222 G 0.217 T 0.280


MOTIF ATGACRTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGACRTC   GAYGTCAT         16          0   1.2e-005   3.4e-002
#         ATGACATC   GATGTCAT          8          0   3.7e-003   1.0e+001
#         ATGACGTC   GACGTCAT          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGATGTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGATGTA   TACATCAT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTCAGAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTCAGAAA   TTTCTGAA          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGCTGTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCTGTC   GACAGCTT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGTGACG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTGACG   CGTCACTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds