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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-TCAGTGYA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 130 P= 9.0e-003
 0.000502 0.149841 0.252180 0.597477
 0.000502 0.880407 0.118589 0.000502
 0.884948 0.000317 0.000317 0.114419
 0.000502 0.000317 0.998680 0.000502
 0.000502 0.000317 0.000317 0.998865
 0.000502 0.000317 0.998680 0.000502
 0.000502 0.363867 0.034516 0.601116
 0.916997 0.000317 0.082184 0.000502

MOTIF 2-ATGAAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 2.5e-002
 0.829183 0.000775 0.000775 0.169266
 0.160930 0.012275 0.015744 0.811050
 0.001229 0.084408 0.885353 0.029010
 0.858048 0.084386 0.028556 0.029010
 0.941570 0.000775 0.000775 0.056880
 0.982252 0.000775 0.015744 0.001229
 0.016197 0.028556 0.056426 0.898820
 0.041931 0.014666 0.914394 0.029010

MOTIF 3-AACCMAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.789953 0.104263 0.104263 0.001522
 0.962162 0.035357 0.000960 0.001522
 0.001522 0.616848 0.242408 0.139222
 0.001522 0.995997 0.000960 0.001522
 0.387458 0.541266 0.035357 0.035919
 0.858969 0.000960 0.000960 0.139111
 0.996559 0.000960 0.000960 0.001522
 0.001522 0.169350 0.827607 0.001522

MOTIF 4-ACACTGRG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.901278 0.001310 0.095336 0.002076
 0.002076 0.994538 0.001310 0.002076
 0.948367 0.001310 0.001310 0.049014
 0.143192 0.806485 0.048247 0.002076
 0.002076 0.067678 0.001310 0.928936
 0.002076 0.001310 0.994538 0.002076
 0.571502 0.001310 0.425113 0.002076
 0.269684 0.001310 0.726931 0.002076

MOTIF 5-AGAAAGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.0e-001
 0.769917 0.046197 0.001254 0.182632
 0.001988 0.001254 0.850346 0.146412
 0.950561 0.001254 0.046197 0.001988
 0.841925 0.091285 0.019859 0.046931
 0.976899 0.001254 0.019859 0.001988
 0.001988 0.136518 0.859506 0.001988
 0.001988 0.001254 0.001254 0.995504
 0.950561 0.046197 0.001254 0.001988

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/zf30C.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_zf30C/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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