********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.281 C 0.219 G 0.219 T 0.281 

MOTIF 1-TTAYRTAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 177 P= 1.8e-007
 0.007247 0.007127 0.003198 0.982428
 0.003318 0.004892 0.083649 0.908140
 0.831444 0.000424 0.137146 0.030986
 0.033620 0.502510 0.040859 0.423011
 0.423011 0.040859 0.502510 0.033620
 0.030986 0.137146 0.000424 0.831444
 0.908140 0.083649 0.004892 0.003318
 0.982428 0.003198 0.007127 0.007247

MOTIF 2-MTCTTATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 5.0e-001
 0.436441 0.527040 0.035675 0.000844
 0.000844 0.074507 0.114164 0.810485
 0.042550 0.813704 0.080242 0.063504
 0.105311 0.000658 0.000658 0.893373
 0.000844 0.000658 0.000658 0.997840
 0.914428 0.000658 0.084070 0.000844
 0.000844 0.011068 0.000658 0.987431
 0.000844 0.997654 0.000658 0.000844

MOTIF 3-CTGATRAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.0e-001
 0.001327 0.996312 0.001034 0.001327
 0.001327 0.001034 0.001034 0.996604
 0.001327 0.001034 0.996312 0.001327
 0.700619 0.297020 0.001034 0.001327
 0.001327 0.001034 0.001034 0.996604
 0.602310 0.001034 0.362594 0.034061
 0.865562 0.001034 0.132077 0.001327
 0.442083 0.191627 0.364963 0.001327

MOTIF 4-TCACCGAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 7.6e-001
 0.100350 0.000784 0.025600 0.873266
 0.025822 0.781673 0.067339 0.125166
 0.838017 0.000784 0.075472 0.085727
 0.001006 0.972388 0.000784 0.025822
 0.025862 0.848108 0.025600 0.100430
 0.001006 0.000784 0.947572 0.050638
 0.823474 0.000784 0.000784 0.174958
 0.199774 0.199472 0.000784 0.599970

MOTIF 5-CCCCCGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.026324 0.911581 0.001830 0.060265
 0.026324 0.945523 0.001830 0.026324
 0.060265 0.819722 0.059747 0.060265
 0.002348 0.969498 0.001830 0.026324
 0.002348 0.993474 0.001830 0.002348
 0.002348 0.001830 0.969498 0.026324
 0.002348 0.935557 0.059747 0.002348
 0.762137 0.117851 0.059747 0.060265

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/vri.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_vri/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.98 seconds
********************************************************************************