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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.322 C 0.178 G 0.178 T 0.322 

MOTIF 1-AAAAAGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.992230 0.002040 0.002040 0.003690
 0.829838 0.002040 0.164433 0.003690
 0.753931 0.081473 0.081473 0.083123
 0.912797 0.002040 0.002040 0.083123
 0.912797 0.002040 0.002040 0.083123
 0.003690 0.002040 0.958764 0.035506
 0.750404 0.002040 0.081473 0.166083
 0.162556 0.081473 0.160906 0.595064

MOTIF 2-TCAAATTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004538 0.002509 0.002509 0.990444
 0.208884 0.784069 0.002509 0.004538
 0.697359 0.100204 0.100204 0.102233
 0.990444 0.002509 0.002509 0.004538
 0.990444 0.002509 0.002509 0.004538
 0.102233 0.100204 0.002509 0.795054
 0.004538 0.002509 0.002509 0.990444
 0.795054 0.100204 0.002509 0.102233

MOTIF 3-GCWACACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.005704 0.248725 0.739867 0.005704
 0.251275 0.617082 0.003153 0.128490
 0.374061 0.003153 0.003153 0.619633
 0.987990 0.003153 0.003153 0.005704
 0.005704 0.985439 0.003153 0.005704
 0.865204 0.125939 0.003153 0.005704
 0.005704 0.985439 0.003153 0.005704
 0.005704 0.739867 0.003153 0.251275

MOTIF 4-AAACTAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.938364 0.016182 0.016182 0.029273
 0.938364 0.016182 0.016182 0.029273
 0.938364 0.016182 0.016182 0.029273
 0.029273 0.925273 0.016182 0.029273
 0.029273 0.016182 0.016182 0.938364
 0.938364 0.016182 0.016182 0.029273
 0.938364 0.016182 0.016182 0.029273
 0.029273 0.016182 0.016182 0.938364

MOTIF 5-ATTTAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.984538 0.004059 0.004059 0.007343
 0.007343 0.004059 0.162133 0.826464
 0.007343 0.004059 0.004059 0.984538
 0.007343 0.004059 0.004059 0.984538
 0.984538 0.004059 0.004059 0.007343
 0.661373 0.327224 0.004059 0.007343
 0.984538 0.004059 0.004059 0.007343
 0.984538 0.004059 0.004059 0.007343

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/usp.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_usp/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	0.50 seconds
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