********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-AAGGAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.754647 0.001311 0.001311 0.242732
 0.995242 0.001311 0.001311 0.002137
 0.002137 0.001311 0.994416 0.002137
 0.002137 0.001311 0.994416 0.002137
 0.831513 0.001311 0.001311 0.165866
 0.947449 0.001311 0.049103 0.002137
 0.756125 0.049103 0.192635 0.002137
 0.914857 0.001311 0.081695 0.002137

MOTIF 2-WWATTAGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.586277 0.103167 0.001393 0.309163
 0.360380 0.022425 0.001393 0.615802
 0.994942 0.001393 0.001393 0.002271
 0.002271 0.001393 0.001393 0.994942
 0.002271 0.001393 0.001393 0.994942
 0.994942 0.001393 0.001393 0.002271
 0.002271 0.001393 0.994064 0.002271
 0.002271 0.001393 0.001393 0.994942

MOTIF 3-AACAGCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.858062 0.001253 0.092944 0.047741
 0.907340 0.001253 0.001253 0.090153
 0.002043 0.994660 0.001253 0.002043
 0.995450 0.001253 0.001253 0.002043
 0.002043 0.185229 0.673150 0.139579
 0.093586 0.877497 0.026874 0.002043
 0.002043 0.009994 0.020171 0.967792
 0.002043 0.001253 0.994660 0.002043

MOTIF 4-CATCTCYA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.001504 0.827635 0.034566 0.136295
 0.693533 0.068210 0.068210 0.170048
 0.001504 0.000923 0.000923 0.996650
 0.001504 0.996069 0.000923 0.001504
 0.001504 0.082191 0.000923 0.915382
 0.001504 0.996069 0.000923 0.001504
 0.001504 0.553689 0.000923 0.443884
 0.626137 0.034566 0.135822 0.203474

MOTIF 5-GCTTAGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003394 0.002082 0.991130 0.003394
 0.079305 0.915219 0.002082 0.003394
 0.003394 0.002082 0.002082 0.992442
 0.079550 0.002082 0.230550 0.687818
 0.992442 0.002082 0.002082 0.003394
 0.231862 0.077993 0.686751 0.003394
 0.003394 0.839063 0.154149 0.003394
 0.003394 0.002082 0.991130 0.003394

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/tx.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_tx/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n11.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.99 seconds
********************************************************************************