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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.232 C 0.268 G 0.268 T 0.232 

MOTIF 1-GCCCACCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 6.9e-002
 0.063942 0.078709 0.842439 0.014910
 0.023643 0.936993 0.028908 0.010456
 0.000483 0.914329 0.026928 0.058259
 0.037203 0.674071 0.158195 0.130532
 0.841446 0.063041 0.029411 0.066102
 0.058236 0.836970 0.053676 0.051119
 0.121961 0.660955 0.116250 0.100834
 0.776340 0.057606 0.101706 0.064348

MOTIF 2-CAGCAGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 3.6e-001
 0.070114 0.874517 0.019848 0.035521
 0.904012 0.059138 0.035699 0.001151
 0.009744 0.018514 0.970592 0.001151
 0.001151 0.874305 0.054430 0.070114
 0.766002 0.043017 0.116875 0.074106
 0.104762 0.001328 0.882548 0.011362
 0.035521 0.947771 0.015557 0.001151
 0.850797 0.030939 0.035532 0.082733

MOTIF 3-GGAGTTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 5.0e-001
 0.038236 0.132306 0.703422 0.126037
 0.000523 0.048957 0.811979 0.138541
 0.839954 0.088224 0.039751 0.032071
 0.044754 0.146102 0.752944 0.056201
 0.008941 0.024589 0.053940 0.912530
 0.076185 0.063398 0.006341 0.854076
 0.096231 0.739268 0.119798 0.044704
 0.929235 0.031900 0.007071 0.031794

MOTIF 4-GAGGAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.051190 0.030994 0.916817 0.000999
 0.941145 0.030994 0.001153 0.026707
 0.000999 0.001153 0.984495 0.013352
 0.120941 0.091110 0.786950 0.000999
 0.988246 0.006861 0.003894 0.000999
 0.060777 0.030994 0.894877 0.013352
 0.736407 0.051344 0.091308 0.120941
 0.849479 0.016074 0.013506 0.120941

MOTIF 5-MGGTGACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.629504 0.334854 0.034529 0.001113
 0.034357 0.001285 0.963245 0.001113
 0.001113 0.034529 0.930000 0.034357
 0.001113 0.001285 0.001285 0.996317
 0.067709 0.001285 0.896649 0.034357
 0.729397 0.234961 0.034529 0.001113
 0.034357 0.807490 0.090444 0.067709
 0.167763 0.796595 0.001285 0.034357

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ttk.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ttk/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.70 seconds
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