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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.323 C 0.177 G 0.177 T 0.323 

MOTIF 1-GTAAATAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 93 P= 1.2e-001
 0.122893 0.029886 0.846164 0.001057
 0.157430 0.041257 0.012798 0.788514
 0.959987 0.015698 0.023258 0.001057
 0.946244 0.046010 0.006689 0.001057
 0.965718 0.009967 0.000579 0.023736
 0.001057 0.110823 0.000579 0.887541
 0.991675 0.000579 0.006689 0.001057
 0.653244 0.000579 0.234429 0.111748

MOTIF 2-ATGGAGTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.988014 0.003132 0.003132 0.005721
 0.128458 0.003132 0.125870 0.742539
 0.005721 0.003132 0.985425 0.005721
 0.005721 0.003132 0.985425 0.005721
 0.988014 0.003132 0.003132 0.005721
 0.005721 0.003132 0.985425 0.005721
 0.005721 0.003132 0.125870 0.865277
 0.128458 0.125870 0.125870 0.619802

MOTIF 3-TATCGATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.004160 0.091949 0.046897 0.856994
 0.991285 0.002277 0.002277 0.004160
 0.093542 0.002277 0.002277 0.901903
 0.004160 0.989403 0.002277 0.004160
 0.004160 0.002277 0.989403 0.004160
 0.901903 0.002277 0.002277 0.093542
 0.004160 0.002277 0.002277 0.991285
 0.856994 0.046897 0.091949 0.004160

MOTIF 4-GTACACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.0e-001
 0.002410 0.001319 0.993861 0.002410
 0.127829 0.001319 0.001319 0.869532
 0.804505 0.053021 0.053104 0.089369
 0.060383 0.931140 0.001319 0.007158
 0.994951 0.001319 0.001319 0.002410
 0.002410 0.890124 0.001319 0.106147
 0.921847 0.022722 0.053021 0.002410
 0.105980 0.765318 0.022722 0.105980

MOTIF 5-CATCTACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.000881 0.948526 0.049713 0.000881
 0.611912 0.197454 0.019379 0.171255
 0.065454 0.121715 0.038276 0.774555
 0.000881 0.997756 0.000482 0.000881
 0.019778 0.151838 0.193246 0.635139
 0.603203 0.117659 0.000482 0.278656
 0.000881 0.903181 0.095057 0.000881
 0.092174 0.132941 0.106494 0.668391

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/trh.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_trh/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.82 seconds
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