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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-GGCAGCMC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 117 P= 1.2e-004
 0.013981 0.013771 0.971650 0.000598
 0.013981 0.000367 0.985054 0.000598
 0.000598 0.985054 0.000367 0.013981
 0.998667 0.000367 0.000367 0.000598
 0.081677 0.000367 0.903975 0.013981
 0.000598 0.944777 0.013750 0.040875
 0.458251 0.335200 0.069421 0.137127
 0.014002 0.958224 0.000367 0.027406

MOTIF 2-MTGCCAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 2.5e-002
 0.388713 0.609276 0.000765 0.001246
 0.001246 0.000765 0.000765 0.997225
 0.152567 0.000765 0.845422 0.001246
 0.113006 0.749996 0.000765 0.136233
 0.001246 0.894029 0.000765 0.103961
 0.982207 0.015783 0.000765 0.001246
 0.997225 0.000765 0.000765 0.001246
 0.001246 0.996744 0.000765 0.001246

MOTIF 3-WCAGCTGW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.2e-001
 0.652719 0.001019 0.001019 0.345244
 0.001659 0.995663 0.001019 0.001659
 0.996303 0.001019 0.001019 0.001659
 0.001659 0.001019 0.992113 0.005209
 0.005209 0.992113 0.001019 0.001659
 0.001659 0.001019 0.001019 0.996303
 0.001659 0.001019 0.995663 0.001659
 0.345244 0.001019 0.001019 0.652719

MOTIF 4-GGTCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.2e-001
 0.028164 0.017291 0.926382 0.028164
 0.028164 0.017291 0.926382 0.028164
 0.028164 0.017291 0.017291 0.937255
 0.028164 0.926382 0.017291 0.028164
 0.937255 0.017291 0.017291 0.028164
 0.028164 0.926382 0.017291 0.028164
 0.937255 0.017291 0.017291 0.028164
 0.028164 0.926382 0.017291 0.028164

MOTIF 5-TATCGATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 1.2e-001
 0.216987 0.088575 0.000618 0.693820
 0.997758 0.000618 0.000618 0.001007
 0.010909 0.083160 0.025447 0.880484
 0.018403 0.979972 0.000618 0.001007
 0.001007 0.000618 0.979972 0.018403
 0.880484 0.025447 0.083160 0.010909
 0.001007 0.000618 0.000618 0.997758
 0.693820 0.000618 0.088575 0.216987

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/trem.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_trem/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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