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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.308 C 0.192 G 0.192 T 0.308 

MOTIF 1-CAAGTGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.001782 0.874575 0.121861 0.001782
 0.955874 0.001112 0.041232 0.001782
 0.995994 0.001112 0.001112 0.001782
 0.001782 0.121861 0.794206 0.082152
 0.082152 0.041232 0.001112 0.875504
 0.041902 0.001112 0.955204 0.001782
 0.001782 0.914954 0.081481 0.001782
 0.232418 0.041232 0.684447 0.041902

MOTIF 2-CAAAGTTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.003628 0.990482 0.002263 0.003628
 0.991846 0.002263 0.002263 0.003628
 0.991846 0.002263 0.002263 0.003628
 0.910181 0.083928 0.002263 0.003628
 0.003628 0.002263 0.990482 0.003628
 0.249411 0.002263 0.002263 0.746063
 0.003628 0.002263 0.002263 0.991846
 0.003628 0.990482 0.002263 0.003628

MOTIF 3-AGCAGCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 8.8e-001
 0.918554 0.014292 0.000897 0.066258
 0.033796 0.098284 0.736946 0.130974
 0.001437 0.866640 0.065717 0.066206
 0.845270 0.033255 0.033255 0.088220
 0.037720 0.033255 0.895229 0.033796
 0.098512 0.747603 0.065613 0.088272
 0.883411 0.033255 0.065717 0.017616
 0.012223 0.055321 0.931018 0.001437

MOTIF 4-TCGCTCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.254184 0.001396 0.001396 0.743023
 0.002238 0.994127 0.001396 0.002238
 0.002238 0.152726 0.842797 0.002238
 0.002238 0.994127 0.001396 0.002238
 0.002238 0.001396 0.001396 0.994969
 0.002238 0.994127 0.001396 0.002238
 0.642082 0.303894 0.001396 0.052627
 0.557331 0.203115 0.186927 0.052627

MOTIF 5-CCGGAACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.155629 0.686879 0.078111 0.079381
 0.003376 0.991141 0.002106 0.003376
 0.079381 0.002106 0.915137 0.003376
 0.003376 0.002106 0.991141 0.003376
 0.992411 0.002106 0.002106 0.003376
 0.916407 0.002106 0.002106 0.079381
 0.003376 0.991141 0.002106 0.003376
 0.079381 0.154360 0.610630 0.155629

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/toe.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_toe/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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