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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-AAAGTCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 1.2e-002
 0.667366 0.000496 0.181148 0.150990
 0.908304 0.000496 0.090621 0.000579
 0.990076 0.008849 0.000496 0.000579
 0.000579 0.000496 0.998346 0.000579
 0.000579 0.000496 0.000496 0.998429
 0.000579 0.878274 0.000496 0.120651
 0.908548 0.000496 0.090378 0.000579
 0.863556 0.000496 0.000496 0.135452

MOTIF 2-AAGCAAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.1e-001
 0.993088 0.002182 0.002182 0.002549
 0.993088 0.002182 0.002182 0.002549
 0.002549 0.002182 0.992721 0.002549
 0.002549 0.663973 0.002182 0.331296
 0.730555 0.002182 0.067762 0.199501
 0.993088 0.002182 0.002182 0.002549
 0.993088 0.002182 0.002182 0.002549
 0.002549 0.992721 0.002182 0.002549

MOTIF 3-CAGGTASA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 2.4e-001
 0.001311 0.996255 0.001122 0.001311
 0.996444 0.001122 0.001122 0.001311
 0.001311 0.136396 0.860981 0.001311
 0.272189 0.001122 0.725377 0.001311
 0.001311 0.001122 0.001122 0.996444
 0.996444 0.001122 0.001122 0.001311
 0.001311 0.576394 0.305407 0.116888
 0.590949 0.034859 0.203761 0.170431

MOTIF 4-CTGACTTY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 3.0e-001
 0.001208 0.965470 0.032115 0.001208
 0.001208 0.001034 0.001034 0.996724
 0.063469 0.001034 0.934289 0.001208
 0.747201 0.188396 0.032115 0.032289
 0.001208 0.996550 0.001034 0.001208
 0.001208 0.066249 0.013900 0.918642
 0.063369 0.019849 0.032115 0.884667
 0.014074 0.517484 0.067975 0.400468

MOTIF 5-ATSCTGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 9.9e-001
 0.997673 0.000735 0.000735 0.000858
 0.000858 0.111201 0.000735 0.887206
 0.022937 0.510560 0.288727 0.177776
 0.067167 0.931241 0.000735 0.000858
 0.000858 0.022814 0.000735 0.975594
 0.089246 0.199767 0.710130 0.000858
 0.000858 0.045035 0.953249 0.000858
 0.133546 0.665363 0.200233 0.000858

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/tll.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_tll/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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