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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.343 C 0.157 G 0.157 T 0.343 

MOTIF 1-AATTATTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.743231 0.001134 0.001134 0.254501
 0.955358 0.031451 0.010712 0.002479
 0.002479 0.051214 0.001134 0.945174
 0.002479 0.202425 0.001134 0.793962
 0.995254 0.001134 0.001134 0.002479
 0.002479 0.001134 0.001134 0.995254
 0.143340 0.021865 0.001134 0.833661
 0.002479 0.001134 0.993909 0.002479

MOTIF 2-CAAAAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 7.0e-001
 0.025119 0.946587 0.018177 0.010117
 0.739501 0.034317 0.035900 0.190282
 0.900844 0.016225 0.032287 0.050643
 0.701346 0.102291 0.070168 0.126196
 0.853515 0.028409 0.024919 0.093156
 0.825288 0.013551 0.021573 0.139588
 0.079167 0.071543 0.104874 0.744415
 0.077412 0.017591 0.883940 0.021056

MOTIF 3-GATCCCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.065944 0.000862 0.931309 0.001885
 0.844046 0.077034 0.000862 0.078057
 0.154352 0.000862 0.000862 0.843924
 0.192807 0.804446 0.000862 0.001885
 0.001885 0.789170 0.115120 0.093824
 0.039971 0.690556 0.038948 0.230524
 0.093824 0.789170 0.038948 0.078057
 0.078057 0.537966 0.191661 0.192316

MOTIF 4-CTTTSCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002582 0.993656 0.001181 0.002582
 0.002582 0.001181 0.053337 0.942901
 0.002582 0.001181 0.157816 0.838421
 0.002582 0.001181 0.157816 0.838421
 0.054738 0.314789 0.627892 0.002582
 0.054738 0.889344 0.001181 0.054738
 0.002582 0.993656 0.001181 0.002582
 0.838421 0.053337 0.105660 0.002582

MOTIF 5-ACTGCGTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.783504 0.036306 0.036306 0.143883
 0.001757 0.924562 0.071923 0.001757
 0.286008 0.000804 0.000804 0.712385
 0.072763 0.071809 0.818168 0.037260
 0.037260 0.711317 0.143043 0.108380
 0.001757 0.036306 0.960179 0.001757
 0.250505 0.000804 0.000804 0.747887
 0.001757 0.036306 0.782436 0.179500

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/tio.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_tio/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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