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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-AAGTATGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 1.3e-002
 0.998840 0.000375 0.000375 0.000410
 0.937760 0.000375 0.026670 0.035195
 0.049492 0.000375 0.949724 0.000410
 0.023486 0.000375 0.065962 0.910178
 0.987962 0.000375 0.000375 0.011288
 0.000410 0.000375 0.230774 0.768441
 0.029585 0.000375 0.969631 0.000410
 0.000410 0.998806 0.000375 0.000410

MOTIF 2-CCACCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.001568 0.948721 0.001436 0.048275
 0.001568 0.953773 0.001436 0.043222
 0.828338 0.001436 0.168657 0.001568
 0.077352 0.625628 0.001436 0.295584
 0.001568 0.931072 0.001436 0.065923
 0.085280 0.894472 0.001436 0.018812
 0.953905 0.043090 0.001436 0.001568
 0.001568 0.995427 0.001436 0.001568

MOTIF 3-CTAATTAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.3e-001
 0.075121 0.704544 0.004818 0.215517
 0.005261 0.144763 0.004818 0.845159
 0.915244 0.004818 0.074678 0.005261
 0.985104 0.004818 0.004818 0.005261
 0.005261 0.004818 0.004818 0.985104
 0.005261 0.074678 0.004818 0.915244
 0.845159 0.004818 0.144763 0.005261
 0.215517 0.004818 0.704544 0.075121

MOTIF 4-ATTTGCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.838214 0.080153 0.080153 0.001481
 0.040816 0.040691 0.001356 0.917137
 0.067640 0.040691 0.040691 0.850978
 0.001481 0.040691 0.017640 0.940188
 0.040816 0.007830 0.910538 0.040816
 0.001481 0.974487 0.001356 0.022675
 0.001481 0.001356 0.096776 0.900387
 0.040816 0.837770 0.001356 0.120058

MOTIF 5-ACGCAMAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 1.0e+000
 0.974809 0.023551 0.000784 0.000856
 0.042211 0.910688 0.023514 0.023587
 0.162050 0.023514 0.813580 0.000856
 0.000856 0.919866 0.032924 0.046354
 0.838022 0.137608 0.023514 0.000856
 0.567092 0.321490 0.032924 0.078494
 0.997577 0.000784 0.000784 0.000856
 0.121625 0.808433 0.046318 0.023623

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/suHw.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_suHw/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.75 seconds
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