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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-CAACACTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 132 P= 4.5e-004
 0.000530 0.998563 0.000378 0.000530
 0.840923 0.158169 0.000378 0.000530
 0.853120 0.000378 0.145973 0.000530
 0.000530 0.998563 0.000378 0.000530
 0.741224 0.039893 0.025579 0.193303
 0.000530 0.998563 0.000378 0.000530
 0.000530 0.000378 0.000378 0.998715
 0.156544 0.000378 0.740587 0.102491

MOTIF 2-GGTCACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 77 P= 4.9e-002
 0.000768 0.000548 0.997916 0.000768
 0.019011 0.037093 0.943128 0.000768
 0.000768 0.000548 0.094683 0.904001
 0.000768 0.979673 0.018791 0.000768
 0.943170 0.037271 0.018791 0.000768
 0.000768 0.961430 0.018791 0.019011
 0.979864 0.000548 0.000548 0.019041
 0.000768 0.986191 0.000548 0.012493

MOTIF 3-CTTTAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001910 0.994818 0.001362 0.001910
 0.001910 0.137884 0.001362 0.858844
 0.047270 0.020140 0.001362 0.931227
 0.001910 0.001362 0.001362 0.995365
 0.995365 0.001362 0.001362 0.001910
 0.904351 0.092377 0.001362 0.001910
 0.703398 0.092230 0.020140 0.184232
 0.683248 0.046723 0.046723 0.223305

MOTIF 4-TATCGATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 8.8e-001
 0.208989 0.036955 0.049769 0.704288
 0.996346 0.001074 0.001074 0.001506
 0.037328 0.001074 0.054779 0.906818
 0.007466 0.989954 0.001074 0.001506
 0.001506 0.001074 0.989954 0.007466
 0.906818 0.054779 0.001074 0.037328
 0.001506 0.001074 0.001074 0.996346
 0.704288 0.049769 0.036955 0.208989

MOTIF 5-AATGGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 9.5e-001
 0.997157 0.000836 0.000836 0.001171
 0.929656 0.000836 0.000836 0.068672
 0.056913 0.028707 0.208127 0.706254
 0.047973 0.000836 0.878485 0.072706
 0.249008 0.000836 0.748984 0.001171
 0.938836 0.000836 0.059157 0.001171
 0.941416 0.000836 0.056577 0.001171
 0.941416 0.056577 0.000836 0.001171

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/stwl.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_stwl/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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