********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.319 C 0.181 G 0.181 T 0.319 

MOTIF 1-ACACTGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 91 P= 5.3e-003
 0.768798 0.045115 0.078942 0.107145
 0.017121 0.917377 0.020153 0.045349
 0.690255 0.034147 0.112365 0.163233
 0.034054 0.848556 0.006158 0.111231
 0.130589 0.049839 0.076175 0.743397
 0.000644 0.006158 0.950706 0.042491
 0.823344 0.028399 0.056478 0.091779
 0.609972 0.164284 0.116882 0.108863

MOTIF 2-GTAAATAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 4.9e-002
 0.049612 0.000731 0.943001 0.006655
 0.001291 0.049052 0.085135 0.864522
 0.957592 0.028775 0.000731 0.012901
 0.913023 0.028775 0.000731 0.057470
 0.969202 0.000731 0.000731 0.029335
 0.047804 0.085135 0.000731 0.866330
 0.913023 0.000731 0.056910 0.029335
 0.181234 0.000731 0.595302 0.222732

MOTIF 3-AAGCAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 3.0e-001
 0.966567 0.000794 0.031237 0.001402
 0.789311 0.000794 0.034929 0.174965
 0.001402 0.000794 0.996402 0.001402
 0.001402 0.701267 0.234946 0.062385
 0.701875 0.061777 0.122760 0.113588
 0.997010 0.000794 0.000794 0.001402
 0.997010 0.000794 0.000794 0.001402
 0.001402 0.996402 0.000794 0.001402

MOTIF 4-CTATCGAY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.002952 0.992425 0.001672 0.002952
 0.002952 0.220799 0.065767 0.710482
 0.993705 0.001672 0.001672 0.002952
 0.067047 0.065767 0.001672 0.865515
 0.002952 0.992425 0.001672 0.002952
 0.002952 0.001672 0.992425 0.002952
 0.993705 0.001672 0.001672 0.002952
 0.002952 0.579976 0.092300 0.324772

MOTIF 5-ATTGARAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.993832 0.001638 0.001638 0.002892
 0.002892 0.001638 0.001638 0.993832
 0.002892 0.001638 0.001638 0.993832
 0.002892 0.001638 0.992578 0.002892
 0.993832 0.001638 0.001638 0.002892
 0.446782 0.190645 0.254055 0.108518
 0.993832 0.001638 0.001638 0.002892
 0.002892 0.001638 0.001638 0.993832

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/sima.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_sima/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n02.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.72 seconds
********************************************************************************