******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.291 C 0.209 G 0.209 T 0.291 MOTIF 1-RMATTCCA STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 156 P= 9.0e-003 0.630766 0.000285 0.368553 0.000396 0.354215 0.645104 0.000285 0.000396 0.989597 0.000285 0.009722 0.000396 0.000396 0.000285 0.000285 0.999034 0.212000 0.000285 0.000285 0.787430 0.000396 0.998924 0.000285 0.000396 0.000396 0.998924 0.000285 0.000396 0.568200 0.000285 0.283473 0.148042 MOTIF 2-CTACGCCA STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001 0.026418 0.928127 0.019036 0.026418 0.026418 0.019036 0.019036 0.935509 0.935509 0.019036 0.019036 0.026418 0.026418 0.928127 0.019036 0.026418 0.026418 0.019036 0.928127 0.026418 0.026418 0.928127 0.019036 0.026418 0.026418 0.928127 0.019036 0.026418 0.935509 0.019036 0.019036 0.026418 MOTIF 3-ATTTATGT STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 7.9e-001 0.852915 0.013105 0.132743 0.001237 0.001237 0.030395 0.000891 0.967476 0.041011 0.000891 0.075979 0.882119 0.001237 0.050515 0.030395 0.917852 0.902169 0.000891 0.095702 0.001237 0.001237 0.178105 0.000891 0.819767 0.001237 0.000891 0.996635 0.001237 0.179363 0.188139 0.070047 0.562452 MOTIF 4-AAATATTT STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001 0.935509 0.019036 0.019036 0.026418 0.935509 0.019036 0.019036 0.026418 0.935509 0.019036 0.019036 0.026418 0.026418 0.019036 0.019036 0.935509 0.935509 0.019036 0.019036 0.026418 0.026418 0.019036 0.019036 0.935509 0.026418 0.019036 0.019036 0.935509 0.026418 0.019036 0.019036 0.935509 MOTIF 5-AYAAATGA STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 1.0e+000 0.997278 0.000803 0.000803 0.001115 0.001115 0.375366 0.000803 0.622715 0.879647 0.000803 0.027395 0.092155 0.944010 0.000803 0.054072 0.001115 0.986270 0.000803 0.011811 0.001115 0.081147 0.160868 0.000803 0.757182 0.001115 0.000803 0.771789 0.226292 0.997278 0.000803 0.000803 0.001115 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/sd.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_sd/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 1.75 seconds ********************************************************************************