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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.326 C 0.174 G 0.174 T 0.326 

MOTIF 1-CAGTGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.2e-001
 0.001538 0.881497 0.000824 0.116141
 0.917771 0.079867 0.000824 0.001538
 0.001538 0.000824 0.996100 0.001538
 0.001538 0.000824 0.131905 0.865733
 0.001538 0.000824 0.963357 0.034281
 0.001538 0.720385 0.230241 0.047836
 0.668422 0.033568 0.000824 0.297185
 0.509277 0.244646 0.244539 0.001538

MOTIF 2-GTACATAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.2e-001
 0.230237 0.037739 0.730295 0.001729
 0.038541 0.201021 0.000927 0.759511
 0.996418 0.000927 0.000927 0.001729
 0.001729 0.958804 0.037739 0.001729
 0.833811 0.089790 0.000927 0.075472
 0.001729 0.000927 0.037739 0.959605
 0.996418 0.000927 0.000927 0.001729
 0.001729 0.724981 0.185344 0.087946

MOTIF 3-GTCAACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 8.8e-001
 0.096504 0.079287 0.822376 0.001833
 0.119164 0.000982 0.040009 0.839844
 0.159271 0.837914 0.000982 0.001833
 0.840096 0.000982 0.040009 0.118912
 0.800944 0.000982 0.040009 0.158065
 0.001833 0.917299 0.079036 0.001833
 0.918149 0.040009 0.040009 0.001833
 0.918149 0.040009 0.000982 0.040859

MOTIF 4-TAGAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003567 0.001912 0.001912 0.992608
 0.763972 0.001912 0.230548 0.003567
 0.003567 0.001912 0.990953 0.003567
 0.840674 0.001912 0.077879 0.079534
 0.003567 0.001912 0.990953 0.003567
 0.916641 0.001912 0.077879 0.003567
 0.916641 0.001912 0.001912 0.079534
 0.764707 0.077879 0.077879 0.079534

MOTIF 5-CGTCAATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.0e+000
 0.028484 0.860811 0.109429 0.001276
 0.001276 0.000684 0.745938 0.252103
 0.028440 0.000684 0.000684 0.970192
 0.001276 0.915184 0.027848 0.055692
 0.754159 0.000684 0.108059 0.137098
 0.752789 0.082177 0.027848 0.137185
 0.121353 0.027848 0.109517 0.741282
 0.001276 0.127954 0.733585 0.137185

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/sage.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_sage/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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