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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.223 G 0.223 T 0.278 

MOTIF 1-AACCRCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 125 P= 9.6e-004
 0.705103 0.000388 0.294024 0.000485
 0.998738 0.000388 0.000388 0.000485
 0.000485 0.998642 0.000388 0.000485
 0.000485 0.998642 0.000388 0.000485
 0.398247 0.000388 0.600880 0.000485
 0.000485 0.986540 0.012491 0.000485
 0.945925 0.000388 0.000388 0.053299
 0.793732 0.000388 0.119949 0.085930

MOTIF 2-AATTTATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 1.7e-001
 0.720599 0.001130 0.011588 0.266682
 0.901916 0.060341 0.036334 0.001409
 0.001409 0.001130 0.071651 0.925810
 0.107361 0.001130 0.036334 0.855175
 0.012454 0.001130 0.086528 0.899888
 0.996331 0.001130 0.001130 0.001409
 0.036613 0.065179 0.001130 0.897078
 0.001409 0.001130 0.996051 0.001409

MOTIF 3-AAATAGTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.832958 0.002548 0.081932 0.082562
 0.640818 0.161571 0.161571 0.036040
 0.991725 0.002548 0.002548 0.003178
 0.003178 0.002548 0.002548 0.991725
 0.991725 0.002548 0.002548 0.003178
 0.003178 0.002548 0.991096 0.003178
 0.003178 0.002548 0.002548 0.991725
 0.003178 0.081932 0.002548 0.912342

MOTIF 4-CCCCATCY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.055837 0.918065 0.001723 0.024374
 0.002149 0.886603 0.055411 0.055837
 0.002149 0.993978 0.001723 0.002149
 0.002149 0.993978 0.001723 0.002149
 0.725447 0.163306 0.055411 0.055837
 0.002149 0.001723 0.001723 0.994404
 0.002149 0.993978 0.001723 0.002149
 0.163732 0.326463 0.001723 0.508082

MOTIF 5-GTAAACTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.042476 0.018218 0.937672 0.001635
 0.042476 0.001311 0.042152 0.914062
 0.954902 0.001311 0.042152 0.001635
 0.937996 0.001311 0.001311 0.059382
 0.914062 0.042152 0.042152 0.001635
 0.018542 0.732678 0.124228 0.124552
 0.290782 0.042152 0.001311 0.665755
 0.897155 0.018218 0.042152 0.042476

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/run.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_run/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.74 seconds
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