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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.326 C 0.174 G 0.174 T 0.326 

MOTIF 1-ACTAAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 97 P= 3.7e-002
 0.711176 0.007831 0.027896 0.253096
 0.077190 0.759631 0.143186 0.019992
 0.000839 0.073591 0.120600 0.804969
 0.966158 0.018285 0.000447 0.015110
 0.801312 0.010058 0.169953 0.018677
 0.885333 0.000447 0.095542 0.018677
 0.035536 0.000447 0.107703 0.856314
 0.955207 0.043507 0.000447 0.000839

MOTIF 2-AGTGAGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.888807 0.075426 0.032305 0.003463
 0.003463 0.001845 0.991230 0.003463
 0.150861 0.001845 0.001845 0.845449
 0.077044 0.075426 0.844068 0.003463
 0.992847 0.001845 0.001845 0.003463
 0.003463 0.001845 0.769776 0.224917
 0.992847 0.001845 0.001845 0.003463
 0.003463 0.297594 0.695480 0.003463

MOTIF 3-CTTAAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.002761 0.993007 0.001471 0.002761
 0.002761 0.001471 0.001471 0.994297
 0.002761 0.001471 0.001471 0.994297
 0.994297 0.001471 0.001471 0.002761
 0.918484 0.001471 0.001471 0.078574
 0.876964 0.118805 0.001471 0.002761
 0.619097 0.100145 0.001471 0.279287
 0.669627 0.060138 0.267474 0.002761

MOTIF 4-AACAACTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 8.8e-001
 0.901751 0.085310 0.000531 0.012407
 0.583995 0.166480 0.227351 0.022174
 0.000997 0.852670 0.145336 0.000997
 0.997941 0.000531 0.000531 0.000997
 0.874991 0.000531 0.119430 0.005047
 0.000997 0.737492 0.096852 0.164659
 0.007288 0.009298 0.000531 0.982883
 0.128336 0.042887 0.779208 0.049569

MOTIF 5-CCTTTTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.029655 0.924891 0.015800 0.029655
 0.029655 0.924891 0.015800 0.029655
 0.029655 0.015800 0.015800 0.938745
 0.029655 0.015800 0.015800 0.938745
 0.029655 0.015800 0.015800 0.938745
 0.029655 0.015800 0.015800 0.938745
 0.029655 0.924891 0.015800 0.029655
 0.938745 0.015800 0.015800 0.029655

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/rgr.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_rgr/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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