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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CACGCACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 6.7e-001
 0.002584 0.992707 0.002125 0.002584
 0.993166 0.002125 0.002125 0.002584
 0.002584 0.992707 0.002125 0.002584
 0.002584 0.002125 0.992707 0.002584
 0.002584 0.900400 0.067407 0.029609
 0.731407 0.067407 0.002125 0.199062
 0.002584 0.927425 0.002125 0.067866
 0.883365 0.111925 0.002125 0.002584

MOTIF 2-AACAAATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.819028 0.001891 0.001891 0.177189
 0.993917 0.001891 0.001891 0.002300
 0.002300 0.993508 0.001891 0.002300
 0.819403 0.118296 0.060000 0.002300
 0.819403 0.001891 0.118296 0.060409
 0.877699 0.060000 0.060000 0.002300
 0.002300 0.001891 0.001891 0.993917
 0.993917 0.001891 0.001891 0.002300

MOTIF 3-CGCAACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 9.5e-001
 0.024945 0.929600 0.020509 0.024945
 0.024945 0.020509 0.929600 0.024945
 0.024945 0.929600 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.024945 0.929600 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945

MOTIF 4-GCAACGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.001675 0.001377 0.995274 0.001675
 0.256309 0.613731 0.043680 0.086280
 0.893318 0.103630 0.001377 0.001675
 0.783649 0.170997 0.001377 0.043977
 0.001675 0.808142 0.188509 0.001675
 0.001675 0.043680 0.952971 0.001675
 0.001675 0.995274 0.001377 0.001675
 0.001675 0.995274 0.001377 0.001675

MOTIF 5-AACAACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.934036 0.020509 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.024945 0.929600 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.024945 0.929600 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945
 0.934036 0.020509 0.020509 0.024945

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/repo.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_repo/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.79 seconds
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