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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-ACCCACCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 9.0e-003
 0.835383 0.028208 0.000933 0.135476
 0.111583 0.859174 0.028208 0.001035
 0.001035 0.887809 0.028208 0.082948
 0.114418 0.773666 0.000933 0.110983
 0.915010 0.000933 0.000933 0.083124
 0.031618 0.939139 0.000933 0.028310
 0.028310 0.911864 0.000933 0.058894
 0.046910 0.939831 0.012224 0.001035

MOTIF 2-GAAATCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 125 P= 2.8e-001
 0.059017 0.001470 0.852396 0.087117
 0.830630 0.054383 0.049108 0.065879
 0.832996 0.047018 0.096208 0.023778
 0.822028 0.062676 0.063297 0.051999
 0.119075 0.111727 0.047401 0.721797
 0.051980 0.764050 0.099909 0.084061
 0.061271 0.016897 0.783611 0.138221
 0.825424 0.025553 0.079748 0.069275

MOTIF 3-ATTTGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.0e-001
 0.935769 0.061640 0.001229 0.001362
 0.037395 0.001229 0.010905 0.950471
 0.001362 0.001229 0.001229 0.996181
 0.001362 0.001229 0.001229 0.996181
 0.037280 0.001229 0.779379 0.182112
 0.001362 0.823071 0.102254 0.073313
 0.151623 0.785375 0.001229 0.061773
 0.743715 0.001229 0.145594 0.109462

MOTIF 4-CATTTATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.178450 0.686005 0.133877 0.001668
 0.995323 0.001504 0.001504 0.001668
 0.001668 0.045487 0.023496 0.929349
 0.045651 0.001504 0.045487 0.907358
 0.045651 0.001504 0.001504 0.951341
 0.995323 0.001504 0.001504 0.001668
 0.075644 0.001504 0.133877 0.788975
 0.001668 0.001504 0.847300 0.149527

MOTIF 5-CAGCATCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.002206 0.935428 0.001990 0.060376
 0.993814 0.001990 0.001990 0.002206
 0.002206 0.060159 0.877258 0.060376
 0.002206 0.876883 0.118704 0.002206
 0.760008 0.001990 0.235796 0.002206
 0.002206 0.001990 0.001990 0.993814
 0.002206 0.935428 0.001990 0.060376
 0.643575 0.060159 0.060253 0.236013

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pros.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pros/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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