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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.318 C 0.182 G 0.182 T 0.318 

MOTIF 1-ACACTGMA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 5.0e-001
 0.997310 0.000718 0.000718 0.001254
 0.111295 0.859356 0.028095 0.001254
 0.887889 0.110140 0.000718 0.001254
 0.001254 0.996775 0.000718 0.001254
 0.001254 0.000718 0.148788 0.849240
 0.001254 0.000718 0.996775 0.001254
 0.488818 0.290279 0.082806 0.138097
 0.657584 0.028052 0.285777 0.028587

MOTIF 2-ACAAAGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.810375 0.001099 0.018421 0.170104
 0.001919 0.924684 0.001099 0.072298
 0.978561 0.001099 0.001099 0.019241
 0.912195 0.042943 0.042943 0.001919
 0.840194 0.018421 0.013530 0.127854
 0.001919 0.001099 0.995063 0.001919
 0.841682 0.071478 0.084921 0.001919
 0.119613 0.084921 0.042943 0.752523

MOTIF 3-ATATTCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.820405 0.044919 0.044989 0.089686
 0.002007 0.001150 0.001150 0.995693
 0.995693 0.001150 0.001150 0.002007
 0.010379 0.001150 0.001150 0.987321
 0.177932 0.044919 0.132881 0.644268
 0.089686 0.907156 0.001150 0.002007
 0.002007 0.994835 0.001150 0.002007
 0.002007 0.888659 0.001150 0.108184

MOTIF 4-CTTAAAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003234 0.991678 0.001853 0.003234
 0.073757 0.001853 0.001853 0.922537
 0.073757 0.072376 0.001853 0.852014
 0.568785 0.072376 0.214104 0.144735
 0.922537 0.001853 0.001853 0.073757
 0.993060 0.001853 0.001853 0.003234
 0.003234 0.001853 0.991678 0.003234
 0.003234 0.001853 0.991678 0.003234

MOTIF 5-AATGGTAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.960218 0.000952 0.000952 0.037879
 0.996436 0.000952 0.000952 0.001661
 0.037879 0.037170 0.109957 0.814994
 0.021176 0.000952 0.939993 0.037879
 0.037879 0.073505 0.777950 0.110666
 0.045188 0.000952 0.037170 0.916691
 0.851563 0.073388 0.037170 0.037879
 0.110666 0.037228 0.741439 0.110666

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pnt.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pnt/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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