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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-CTTWGCTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 110 P= 3.6e-002
 0.000553 0.998552 0.000342 0.000553
 0.012978 0.199486 0.132021 0.655514
 0.124845 0.209703 0.005477 0.659975
 0.449835 0.123810 0.179566 0.246789
 0.000553 0.025192 0.973702 0.000553
 0.120087 0.852703 0.000342 0.026868
 0.044743 0.084422 0.037678 0.833157
 0.847889 0.000342 0.151216 0.000553

MOTIF 2-AGATGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.5e-002
 0.996840 0.000873 0.000873 0.001413
 0.001413 0.000873 0.996300 0.001413
 0.837321 0.000873 0.160393 0.001413
 0.001413 0.000873 0.159981 0.837733
 0.033112 0.032572 0.932903 0.001413
 0.001413 0.000873 0.964602 0.033112
 0.064912 0.932801 0.000873 0.001413
 0.064810 0.000873 0.932903 0.001413

MOTIF 3-ATTYTACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.996315 0.001019 0.001019 0.001648
 0.112907 0.037986 0.037986 0.811121
 0.058762 0.001019 0.001019 0.939201
 0.074218 0.503955 0.042470 0.379357
 0.001648 0.001019 0.001019 0.996315
 0.996315 0.001019 0.001019 0.001648
 0.001648 0.995685 0.001019 0.001648
 0.959288 0.001019 0.038045 0.001648

MOTIF 4-CACGAACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 3.0e-001
 0.005509 0.964977 0.024004 0.005509
 0.785986 0.024004 0.047439 0.142571
 0.071348 0.856660 0.000644 0.071348
 0.239365 0.039934 0.696262 0.024439
 0.935020 0.039934 0.000644 0.024402
 0.937779 0.000644 0.047439 0.014138
 0.001041 0.973913 0.000644 0.024402
 0.001041 0.997274 0.000644 0.001041

MOTIF 5-AAGWWTAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.995623 0.001210 0.001210 0.001957
 0.995623 0.001210 0.001210 0.001957
 0.001957 0.001210 0.994876 0.001957
 0.374457 0.001210 0.001210 0.623123
 0.578282 0.001210 0.001210 0.419298
 0.001957 0.001210 0.001210 0.995623
 0.995623 0.001210 0.001210 0.001957
 0.001957 0.001210 0.001210 0.995623

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pita.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pita/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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