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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-AARATGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 187 P= 7.8e-004
 0.971664 0.007748 0.005245 0.015343
 0.985558 0.000240 0.000240 0.013962
 0.419766 0.131945 0.329701 0.118588
 0.972124 0.004785 0.007748 0.015343
 0.000302 0.007748 0.003994 0.987956
 0.000302 0.007748 0.991648 0.000302
 0.000302 0.015280 0.969075 0.015343
 0.015343 0.969026 0.015329 0.000302

MOTIF 2-TATCGATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.193766 0.001233 0.009230 0.795771
 0.995980 0.001233 0.001233 0.001554
 0.020873 0.028550 0.001233 0.949344
 0.001554 0.995659 0.001233 0.001554
 0.001554 0.001233 0.995659 0.001554
 0.949344 0.001233 0.028550 0.020873
 0.001554 0.001233 0.001233 0.995980
 0.795771 0.009230 0.001233 0.193766

MOTIF 3-TGGCAACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.001347 0.001069 0.068144 0.929441
 0.001347 0.001069 0.895463 0.102122
 0.001347 0.001069 0.895463 0.102122
 0.001347 0.862088 0.135219 0.001347
 0.963032 0.001069 0.001069 0.034830
 0.996516 0.001069 0.001069 0.001347
 0.001347 0.901835 0.034552 0.062266
 0.115351 0.149369 0.633158 0.102122

MOTIF 4-GAGCGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.025345 0.020109 0.929200 0.025345
 0.934436 0.020109 0.020109 0.025345
 0.025345 0.020109 0.929200 0.025345
 0.025345 0.929200 0.020109 0.025345
 0.025345 0.020109 0.929200 0.025345
 0.934436 0.020109 0.020109 0.025345
 0.025345 0.020109 0.929200 0.025345
 0.934436 0.020109 0.020109 0.025345

MOTIF 5-ACAGGTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.826711 0.002624 0.002624 0.168041
 0.003308 0.908526 0.002624 0.085542
 0.909209 0.002624 0.084859 0.003308
 0.003308 0.002624 0.990760 0.003308
 0.003308 0.002624 0.990760 0.003308
 0.003308 0.002624 0.002624 0.991444
 0.826975 0.167093 0.002624 0.003308
 0.662242 0.002624 0.167093 0.168041

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/phol.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_phol/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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