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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-TATCGATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.028318 0.017136 0.017136 0.937409
 0.937409 0.017136 0.017136 0.028318
 0.028318 0.017136 0.017136 0.937409
 0.028318 0.926227 0.017136 0.028318
 0.028318 0.017136 0.926227 0.028318
 0.937409 0.017136 0.017136 0.028318
 0.028318 0.017136 0.017136 0.937409
 0.937409 0.017136 0.017136 0.028318

MOTIF 2-CGAGTGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.002439 0.993645 0.001476 0.002439
 0.165802 0.001476 0.807813 0.024909
 0.994608 0.001476 0.001476 0.002439
 0.024909 0.055755 0.916896 0.002439
 0.024909 0.165103 0.001476 0.808512
 0.056718 0.001476 0.885087 0.056718
 0.886050 0.001476 0.055755 0.056718
 0.111172 0.001476 0.721550 0.165802

MOTIF 3-GCACAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.002768 0.001675 0.992789 0.002768
 0.002768 0.992789 0.001675 0.002768
 0.890284 0.001675 0.001675 0.106366
 0.002768 0.992789 0.001675 0.002768
 0.685119 0.001675 0.187052 0.126154
 0.786687 0.001675 0.105273 0.106366
 0.932288 0.001675 0.063269 0.002768
 0.993882 0.001675 0.001675 0.002768

MOTIF 4-CATCTCTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.002238 0.994171 0.001354 0.002238
 0.795724 0.101099 0.051147 0.052030
 0.002238 0.001354 0.001354 0.995054
 0.002238 0.994171 0.001354 0.002238
 0.245263 0.001354 0.001354 0.752029
 0.002238 0.994171 0.001354 0.002238
 0.101983 0.101099 0.001354 0.795564
 0.945262 0.051147 0.001354 0.002238

MOTIF 5-CACATTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 9.6e-001
 0.028318 0.926227 0.017136 0.028318
 0.937409 0.017136 0.017136 0.028318
 0.028318 0.926227 0.017136 0.028318
 0.937409 0.017136 0.017136 0.028318
 0.028318 0.017136 0.017136 0.937409
 0.028318 0.017136 0.017136 0.937409
 0.028318 0.017136 0.017136 0.937409
 0.028318 0.926227 0.017136 0.028318

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pho.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pho/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.00 seconds
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