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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-AATGGAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 160 P= 1.2e-001
 0.963892 0.003171 0.005022 0.027915
 0.761185 0.024521 0.109854 0.104440
 0.034652 0.143334 0.017052 0.804962
 0.023172 0.003171 0.973224 0.000433
 0.205867 0.006072 0.787628 0.000433
 0.935154 0.017052 0.003765 0.044029
 0.947747 0.011757 0.005917 0.034579
 0.009085 0.966321 0.002076 0.022518

MOTIF 2-AACAGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.865716 0.002169 0.002169 0.129946
 0.737368 0.002169 0.002169 0.258293
 0.002423 0.865257 0.002169 0.130151
 0.993239 0.002169 0.002169 0.002423
 0.002423 0.002169 0.992985 0.002423
 0.002423 0.992985 0.002169 0.002423
 0.002423 0.002169 0.002169 0.993239
 0.002423 0.002169 0.992985 0.002423

MOTIF 3-CGGTCCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 9.1e-001
 0.001744 0.857322 0.093363 0.047571
 0.047571 0.047389 0.903296 0.001744
 0.001744 0.047389 0.754577 0.196290
 0.047571 0.047389 0.047389 0.857652
 0.047571 0.903222 0.001562 0.047645
 0.001744 0.930152 0.020532 0.047571
 0.139373 0.001562 0.857322 0.001744
 0.001744 0.994950 0.001562 0.001744

MOTIF 4-CCTATGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.002688 0.921599 0.073026 0.002688
 0.215229 0.709057 0.073026 0.002688
 0.002688 0.002406 0.143873 0.851033
 0.992499 0.002406 0.002406 0.002688
 0.144154 0.073026 0.002406 0.780413
 0.002688 0.073026 0.921599 0.002688
 0.073307 0.921599 0.002406 0.002688
 0.921880 0.073026 0.002406 0.002688

MOTIF 5-CTCTCTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.001510 0.995629 0.001352 0.001510
 0.120894 0.041082 0.081199 0.756824
 0.001510 0.995629 0.001352 0.001510
 0.041240 0.041019 0.018438 0.899302
 0.045988 0.871561 0.080941 0.001510
 0.120894 0.017773 0.054692 0.806641
 0.041177 0.955962 0.001352 0.001510
 0.041177 0.080941 0.028022 0.849860

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pfk.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pfk/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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