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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-ACTCTCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.795748 0.021332 0.021332 0.161589
 0.001462 0.955826 0.041251 0.001462
 0.001462 0.001412 0.001412 0.995714
 0.001462 0.915987 0.041251 0.041300
 0.129484 0.001412 0.201896 0.667208
 0.041300 0.876020 0.081218 0.001462
 0.875941 0.041251 0.001412 0.081396
 0.041300 0.955826 0.001412 0.001462

MOTIF 2-YTGGCCAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.128830 0.320431 0.171313 0.379426
 0.001859 0.001796 0.001796 0.994550
 0.001859 0.001796 0.994487 0.001859
 0.001859 0.001796 0.994487 0.001859
 0.001859 0.994487 0.001796 0.001859
 0.001859 0.994487 0.001796 0.001859
 0.994550 0.001796 0.001796 0.001859
 0.379426 0.171313 0.320431 0.128830

MOTIF 3-GTCGTAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.001668 0.001612 0.949587 0.047133
 0.183676 0.001612 0.001612 0.813101
 0.092599 0.858656 0.001612 0.047133
 0.001668 0.001612 0.904122 0.092599
 0.065955 0.092689 0.001612 0.839745
 0.793986 0.020433 0.047077 0.138504
 0.047133 0.047077 0.858656 0.047133
 0.138211 0.092689 0.676356 0.092745

MOTIF 4-CTACAGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.001263 0.961834 0.035640 0.001263
 0.051713 0.001220 0.035640 0.911427
 0.892927 0.001220 0.035640 0.070213
 0.035683 0.858464 0.070171 0.035683
 0.789667 0.070060 0.035640 0.104633
 0.173806 0.035640 0.651501 0.139053
 0.173584 0.755093 0.035640 0.035683
 0.070213 0.858353 0.001220 0.070213

MOTIF 5-CCACCGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.001314 0.816475 0.001269 0.180942
 0.073049 0.882873 0.001269 0.042808
 0.873546 0.109046 0.001269 0.016138
 0.001314 0.720086 0.001269 0.277331
 0.001314 0.996103 0.001269 0.001314
 0.148414 0.001269 0.849003 0.001314
 0.001314 0.924368 0.073005 0.001314
 0.001314 0.996103 0.001269 0.001314

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pb.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pb/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.77 seconds
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