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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.357 C 0.143 G 0.143 T 0.357 

MOTIF 1-AGGAWATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 4 P= 1.0e+000
 0.970479 0.006580 0.006580 0.016362
 0.016362 0.006580 0.960696 0.016362
 0.016362 0.006580 0.960696 0.016362
 0.652440 0.006580 0.324619 0.016362
 0.334401 0.006580 0.006580 0.652440
 0.970479 0.006580 0.006580 0.016362
 0.016362 0.006580 0.006580 0.970479
 0.970479 0.006580 0.006580 0.016362

MOTIF 2-ATTABAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.973531 0.005899 0.005899 0.014670
 0.014670 0.005899 0.005899 0.973531
 0.014670 0.005899 0.005899 0.973531
 0.688374 0.005899 0.005899 0.299827
 0.014670 0.291056 0.291056 0.403217
 0.973531 0.005899 0.005899 0.014670
 0.973531 0.005899 0.005899 0.014670
 0.973531 0.005899 0.005899 0.014670

MOTIF 3-CAATTAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 4 P= 1.0e+000
 0.032418 0.922127 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418
 0.032418 0.013036 0.013036 0.941509
 0.032418 0.013036 0.013036 0.941509
 0.941509 0.013036 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418

MOTIF 4-AAGGTCCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 3 P= 1.0e+000
 0.941509 0.013036 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418
 0.032418 0.013036 0.922127 0.032418
 0.032418 0.013036 0.922127 0.032418
 0.032418 0.013036 0.013036 0.941509
 0.032418 0.922127 0.013036 0.032418
 0.032418 0.922127 0.013036 0.032418
 0.032418 0.013036 0.013036 0.941509

MOTIF 5-AGTTTCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 3 P= 1.0e+000
 0.941509 0.013036 0.013036 0.032418
 0.032418 0.013036 0.922127 0.032418
 0.032418 0.013036 0.013036 0.941509
 0.032418 0.013036 0.013036 0.941509
 0.032418 0.013036 0.013036 0.941509
 0.032418 0.922127 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418
 0.941509 0.013036 0.013036 0.032418

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pan.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pan/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	0.33 seconds
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