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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.228 G 0.228 T 0.273 

MOTIF 1-AGGGGAAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 112 P= 3.1e-002
 0.970348 0.017862 0.003875 0.007914
 0.007839 0.017862 0.964301 0.009998
 0.035269 0.007727 0.921680 0.035324
 0.056255 0.000568 0.873152 0.070025
 0.002251 0.000568 0.979207 0.017974
 0.894363 0.017862 0.017862 0.069913
 0.860697 0.019960 0.011037 0.108306
 0.336361 0.029251 0.613668 0.020720

MOTIF 2-TAACGGTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 1.7e-001
 0.046095 0.049725 0.036689 0.867490
 0.873189 0.000456 0.000456 0.125899
 0.831494 0.000456 0.070044 0.098006
 0.000546 0.915017 0.014347 0.070090
 0.178445 0.000456 0.786856 0.034243
 0.000546 0.000456 0.998452 0.000546
 0.000546 0.109316 0.042330 0.847807
 0.604883 0.070089 0.103801 0.221227

MOTIF 3-AAATGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 5.0e-001
 0.980346 0.007535 0.011139 0.000980
 0.987322 0.000818 0.000818 0.011042
 0.793199 0.050761 0.050761 0.105280
 0.050520 0.151864 0.004921 0.792695
 0.062646 0.054514 0.856928 0.025911
 0.795601 0.113537 0.025789 0.065073
 0.957360 0.000818 0.015911 0.025911
 0.962370 0.003108 0.005587 0.028935

MOTIF 4-ACAAAAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 6.7e-001
 0.995380 0.001445 0.001445 0.001731
 0.001731 0.995094 0.001445 0.001731
 0.919366 0.003416 0.001445 0.075774
 0.995380 0.001445 0.001445 0.001731
 0.700653 0.266824 0.001445 0.031079
 0.728668 0.001445 0.001445 0.268442
 0.995380 0.001445 0.001445 0.001731
 0.001731 0.995094 0.001445 0.001731

MOTIF 5-AGACAGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.890241 0.001709 0.106003 0.002047
 0.002047 0.210972 0.732787 0.054194
 0.890409 0.053772 0.053772 0.002047
 0.054110 0.942134 0.001709 0.002047
 0.942472 0.001709 0.001709 0.054110
 0.002047 0.001709 0.994198 0.002047
 0.994536 0.001709 0.001709 0.002047
 0.002047 0.837671 0.106171 0.054110

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/pad.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_pad/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.89 seconds
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