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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-CATGTTYR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 102 P= 2.5e-002
 0.000470 0.932192 0.000413 0.066924
 0.946312 0.052804 0.000413 0.000470
 0.000470 0.180048 0.037230 0.782251
 0.000470 0.000413 0.998646 0.000470
 0.253099 0.000413 0.000413 0.746074
 0.000470 0.097661 0.000413 0.901456
 0.000470 0.520295 0.000413 0.478821
 0.427072 0.020084 0.552375 0.000470

MOTIF 2-CCCTCTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.2e-001
 0.002632 0.992422 0.002314 0.002632
 0.002632 0.992422 0.002314 0.002632
 0.002632 0.964041 0.030695 0.002632
 0.071193 0.070874 0.002314 0.855620
 0.002632 0.992422 0.002314 0.002632
 0.071193 0.070874 0.002314 0.855620
 0.002632 0.786520 0.070874 0.139974
 0.648499 0.070984 0.002314 0.278203

MOTIF 3-CGCACACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 3.0e-001
 0.024191 0.930355 0.021264 0.024191
 0.024191 0.021264 0.930355 0.024191
 0.024191 0.930355 0.021264 0.024191
 0.933282 0.021264 0.021264 0.024191
 0.024191 0.930355 0.021264 0.024191
 0.933282 0.021264 0.021264 0.024191
 0.024191 0.930355 0.021264 0.024191
 0.933282 0.021264 0.021264 0.024191

MOTIF 4-AGTAAGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.995665 0.001382 0.001382 0.001572
 0.124799 0.042325 0.823472 0.009403
 0.001572 0.001382 0.124609 0.872438
 0.823148 0.132954 0.001382 0.042516
 0.872702 0.001382 0.042325 0.083591
 0.042581 0.042325 0.872578 0.042516
 0.083591 0.896506 0.001382 0.018521
 0.978716 0.001382 0.001382 0.018521

MOTIF 5-AAAAAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 9.3e-001
 0.519002 0.195952 0.195556 0.089489
 0.866761 0.027580 0.049796 0.055863
 0.917575 0.010839 0.021567 0.050020
 0.945421 0.027580 0.015936 0.011063
 0.990476 0.001625 0.006049 0.001849
 0.785284 0.049796 0.027580 0.137340
 0.001849 0.001625 0.001625 0.994900
 0.994900 0.001625 0.001625 0.001849

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/p53.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_p53/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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