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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-TAACGGTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 183 P= 5.8e-006
 0.020043 0.006652 0.006652 0.966653
 0.999223 0.000240 0.000240 0.000297
 0.969309 0.000240 0.030154 0.000297
 0.000297 0.999167 0.000240 0.000297
 0.000297 0.000240 0.968942 0.030522
 0.000297 0.007683 0.991724 0.000297
 0.093411 0.098224 0.027885 0.780480
 0.668209 0.045062 0.139274 0.147455

MOTIF 2-CTCTCGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 9.5e-002
 0.000780 0.978242 0.000632 0.020346
 0.004522 0.246853 0.078962 0.669663
 0.165665 0.687245 0.048097 0.098993
 0.048013 0.118347 0.000632 0.833008
 0.000780 0.931009 0.067432 0.000780
 0.000780 0.070501 0.874132 0.054588
 0.118243 0.703866 0.000632 0.177259
 0.022720 0.818861 0.020230 0.138189

MOTIF 3-CAACAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.025109 0.929436 0.020345 0.025109
 0.934200 0.020345 0.020345 0.025109
 0.934200 0.020345 0.020345 0.025109
 0.025109 0.929436 0.020345 0.025109
 0.934200 0.020345 0.020345 0.025109
 0.934200 0.020345 0.020345 0.025109
 0.025109 0.929436 0.020345 0.025109
 0.934200 0.020345 0.020345 0.025109

MOTIF 4-AAATGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 8.8e-001
 0.923491 0.002237 0.002237 0.072035
 0.784272 0.002237 0.210731 0.002760
 0.992766 0.002237 0.002237 0.002760
 0.002760 0.002237 0.002237 0.992766
 0.002760 0.002237 0.992242 0.002760
 0.992766 0.002237 0.002237 0.002760
 0.854216 0.071512 0.002237 0.072035
 0.876250 0.002237 0.118753 0.002760

MOTIF 5-GACGTCRC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.002621 0.002124 0.992634 0.002621
 0.795583 0.002124 0.002124 0.200169
 0.002621 0.992634 0.002124 0.002621
 0.002621 0.002124 0.992634 0.002621
 0.002621 0.002124 0.002124 0.993131
 0.002621 0.860865 0.133893 0.002621
 0.530338 0.002124 0.464917 0.002621
 0.002621 0.728244 0.002124 0.267011

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ovo.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ovo/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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