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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-ACAAATAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 2.1e-001
 0.997603 0.000646 0.000646 0.001105
 0.001105 0.997144 0.000646 0.001105
 0.905292 0.027862 0.041470 0.025376
 0.826210 0.000646 0.000646 0.172498
 0.970387 0.027862 0.000646 0.001105
 0.001105 0.186804 0.049267 0.762824
 0.919606 0.000646 0.078643 0.001105
 0.103036 0.085893 0.000646 0.810425

MOTIF 2-GGCAAACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 5.0e-001
 0.229608 0.027666 0.641394 0.101331
 0.001227 0.000717 0.996829 0.001227
 0.001227 0.714682 0.054702 0.229389
 0.970390 0.000717 0.000717 0.028176
 0.916404 0.000717 0.081652 0.001227
 0.970346 0.000717 0.027710 0.001227
 0.070508 0.927549 0.000717 0.001227
 0.906741 0.000717 0.000717 0.091824

MOTIF 3-AAATAACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.937773 0.016773 0.016773 0.028682
 0.937773 0.016773 0.016773 0.028682
 0.937773 0.016773 0.016773 0.028682
 0.028682 0.016773 0.016773 0.937773
 0.937773 0.016773 0.016773 0.028682
 0.937773 0.016773 0.016773 0.028682
 0.028682 0.925864 0.016773 0.028682
 0.028682 0.016773 0.016773 0.937773

MOTIF 4-AAAATGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.992789 0.001944 0.001944 0.003324
 0.846271 0.001944 0.148462 0.003324
 0.815646 0.001944 0.179086 0.003324
 0.992789 0.001944 0.001944 0.003324
 0.003324 0.001944 0.001944 0.992789
 0.003324 0.001944 0.991409 0.003324
 0.992789 0.001944 0.001944 0.003324
 0.992789 0.001944 0.001944 0.003324

MOTIF 5-TAAATGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002521 0.001474 0.001474 0.994530
 0.828178 0.001474 0.112435 0.057912
 0.883748 0.056866 0.001474 0.057912
 0.883569 0.112435 0.001474 0.002521
 0.025451 0.024405 0.056866 0.893278
 0.002521 0.001474 0.993483 0.002521
 0.002521 0.001474 0.993483 0.002521
 0.883390 0.001474 0.001474 0.113661

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/org-1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_org-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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