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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-GACTGCAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.076867 0.001011 0.904891 0.017230
 0.980747 0.016546 0.001011 0.001696
 0.039221 0.845375 0.076183 0.039221
 0.189807 0.016546 0.076062 0.717585
 0.039221 0.064127 0.744491 0.152161
 0.001696 0.882900 0.038537 0.076867
 0.927688 0.001011 0.054071 0.017230
 0.092402 0.001011 0.043089 0.863498

MOTIF 2-CATTCGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.047110 0.949639 0.001215 0.002037
 0.860170 0.001215 0.136579 0.002037
 0.047110 0.001215 0.001215 0.950461
 0.137401 0.046288 0.091506 0.724806
 0.002037 0.768766 0.091506 0.137692
 0.047110 0.001215 0.949639 0.002037
 0.769295 0.182381 0.001215 0.047110
 0.002037 0.859348 0.091506 0.047110

MOTIF 3-AAAATGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.980861 0.001106 0.001106 0.016927
 0.813970 0.166079 0.018097 0.001855
 0.888871 0.008957 0.018097 0.084075
 0.790050 0.083459 0.001106 0.125384
 0.001855 0.083327 0.071826 0.842993
 0.001855 0.042150 0.954140 0.001855
 0.001855 0.001106 0.001106 0.995933
 0.995933 0.001106 0.001106 0.001855

MOTIF 4-ATATCAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 220 P= 9.8e-001
 0.937564 0.016982 0.016982 0.028473
 0.028473 0.016982 0.016982 0.937564
 0.937564 0.016982 0.016982 0.028473
 0.028473 0.016982 0.016982 0.937564
 0.028473 0.926073 0.016982 0.028473
 0.937564 0.016982 0.016982 0.028473
 0.937564 0.016982 0.016982 0.028473
 0.937564 0.016982 0.016982 0.028473

MOTIF 5-ACTACAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.994840 0.001403 0.001403 0.002353
 0.002353 0.627870 0.158125 0.211653
 0.002353 0.001403 0.001403 0.994840
 0.838455 0.053476 0.001403 0.106666
 0.002353 0.941818 0.053476 0.002353
 0.838119 0.001403 0.001403 0.159074
 0.994840 0.001403 0.001403 0.002353
 0.002353 0.836916 0.001403 0.159328

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/net.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_net/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	3.04 seconds
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