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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-GAMATTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 188 P= 2.3e-002
 0.178454 0.184287 0.447580 0.189679
 0.750528 0.000342 0.238839 0.010291
 0.464400 0.329171 0.206056 0.000373
 0.993983 0.000342 0.005301 0.000373
 0.000373 0.000342 0.000342 0.998942
 0.118851 0.015219 0.183219 0.682710
 0.010291 0.973515 0.000342 0.015851
 0.000373 0.998912 0.000342 0.000373

MOTIF 2-AGCAGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.879770 0.057862 0.032768 0.029600
 0.084660 0.069461 0.707908 0.137971
 0.029417 0.803224 0.057771 0.109589
 0.951463 0.018141 0.029329 0.001066
 0.034839 0.000979 0.963116 0.001066
 0.143183 0.826376 0.000979 0.029462
 0.062024 0.027990 0.086442 0.823544
 0.086163 0.029329 0.883442 0.001066

MOTIF 3-CCACCCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 2.3e-001
 0.012430 0.902759 0.063251 0.021559
 0.059223 0.939278 0.000717 0.000781
 0.914472 0.000717 0.084029 0.000781
 0.000781 0.976909 0.000717 0.021593
 0.000781 0.997720 0.000717 0.000781
 0.055910 0.900969 0.000717 0.042404
 0.074105 0.871517 0.000717 0.053661
 0.189441 0.713535 0.009319 0.087705

MOTIF 4-CTCTGCCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 8.8e-001
 0.043523 0.936087 0.001448 0.018942
 0.170173 0.085474 0.127690 0.616663
 0.001578 0.978033 0.001448 0.018942
 0.043523 0.043394 0.001448 0.911635
 0.001578 0.043394 0.911506 0.043523
 0.001578 0.911506 0.043394 0.043523
 0.043523 0.851926 0.018812 0.085739
 0.043523 0.043461 0.018812 0.894204

MOTIF 5-TGGCAAWG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 9.5e-001
 0.001031 0.031680 0.028400 0.938889
 0.055850 0.000946 0.942173 0.001031
 0.149837 0.031680 0.817452 0.001031
 0.144208 0.853815 0.000946 0.001031
 0.942258 0.028356 0.000946 0.028440
 0.896113 0.047047 0.028356 0.028484
 0.482578 0.083262 0.055853 0.378306
 0.001031 0.000946 0.996992 0.001031

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/nerfin-1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_nerfin-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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