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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.229 G 0.229 T 0.272 

MOTIF 1-RGCAGCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 155 P= 2.0e-003
 0.522683 0.092348 0.370905 0.014064
 0.315457 0.000395 0.683680 0.000469
 0.012436 0.974733 0.012362 0.000469
 0.998742 0.000395 0.000395 0.000469
 0.032724 0.000395 0.954426 0.012455
 0.000469 0.857951 0.141112 0.000469
 0.000469 0.030290 0.000395 0.968847
 0.000469 0.000395 0.998668 0.000469

MOTIF 2-TAAATAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.001311 0.001103 0.001103 0.996482
 0.996482 0.001103 0.001103 0.001311
 0.895740 0.001103 0.101845 0.001311
 0.963009 0.034576 0.001103 0.001311
 0.001311 0.001103 0.001103 0.996482
 0.636367 0.001103 0.057403 0.305127
 0.996482 0.001103 0.001103 0.001311
 0.671701 0.135318 0.135372 0.057610

MOTIF 3-CGCCCACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.002132 0.993941 0.001794 0.002132
 0.002132 0.001794 0.884721 0.111353
 0.056567 0.939506 0.001794 0.002132
 0.002132 0.993941 0.001794 0.002132
 0.002132 0.830462 0.110839 0.056567
 0.994279 0.001794 0.001794 0.002132
 0.002132 0.993941 0.001794 0.002132
 0.594950 0.275731 0.017966 0.111353

MOTIF 4-ACAGATAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.6e-001
 0.960094 0.001190 0.037301 0.001414
 0.001414 0.799701 0.109872 0.089013
 0.996205 0.001190 0.001190 0.001414
 0.037525 0.001190 0.814727 0.146557
 0.996205 0.001190 0.001190 0.001414
 0.037525 0.001190 0.073645 0.887640
 0.923867 0.001190 0.073528 0.001414
 0.020871 0.273297 0.704417 0.001414

MOTIF 5-AAACGAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.927215 0.002171 0.002171 0.068443
 0.861352 0.002171 0.068034 0.068443
 0.927215 0.068034 0.002171 0.002580
 0.002580 0.926806 0.068034 0.002580
 0.002580 0.002171 0.860732 0.134517
 0.861140 0.002171 0.002171 0.134517
 0.002580 0.002171 0.992669 0.002580
 0.927215 0.002171 0.068034 0.002580

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/nau.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_nau/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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