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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.297 C 0.203 G 0.203 T 0.297 

MOTIF 1-HGATAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 137 P= 1.2e-001
 0.375108 0.231668 0.010477 0.382746
 0.000436 0.000297 0.998831 0.000436
 0.998970 0.000297 0.000297 0.000436
 0.000436 0.030887 0.000297 0.968380
 0.909875 0.000297 0.000297 0.089531
 0.870029 0.032959 0.010461 0.086551
 0.000436 0.000297 0.998831 0.000436
 0.647601 0.173868 0.178095 0.000436

MOTIF 2-ACTGATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 5.0e-001
 0.740562 0.026197 0.206695 0.026546
 0.026546 0.836497 0.004524 0.132433
 0.129184 0.005612 0.000744 0.864461
 0.005961 0.026197 0.966750 0.001092
 0.946432 0.051732 0.000744 0.001092
 0.052081 0.000744 0.000744 0.946432
 0.953564 0.000744 0.000744 0.044949
 0.896507 0.026197 0.014458 0.062838

MOTIF 3-CAAAKGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001886 0.994943 0.001284 0.001886
 0.731418 0.001284 0.089185 0.178113
 0.686109 0.001284 0.001284 0.311323
 0.995546 0.001284 0.001284 0.001886
 0.001886 0.067210 0.353738 0.577166
 0.001886 0.001284 0.994943 0.001886
 0.001886 0.001284 0.001284 0.995546
 0.995546 0.001284 0.001284 0.001886

MOTIF 4-GMAAACAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.4e-001
 0.056156 0.000747 0.942000 0.001097
 0.310256 0.472257 0.103249 0.114238
 0.961263 0.000747 0.036893 0.001097
 0.852807 0.102315 0.036893 0.007984
 0.971845 0.000747 0.000747 0.026661
 0.001097 0.971495 0.026311 0.001097
 0.895154 0.051874 0.051874 0.001097
 0.242930 0.088103 0.051874 0.617093

MOTIF 5-ACGAGTGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.827383 0.001430 0.050369 0.120818
 0.002100 0.798298 0.099466 0.100136
 0.002100 0.001430 0.994369 0.002100
 0.946101 0.001430 0.001430 0.051040
 0.022360 0.050369 0.925171 0.002100
 0.051040 0.001430 0.021689 0.925842
 0.002100 0.001430 0.896175 0.100294
 0.002100 0.050369 0.748724 0.198806

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/mirr.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_mirr/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	2.03 seconds
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