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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-CACTTGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.091378 0.636305 0.180939 0.091378
 0.902932 0.002845 0.002845 0.091378
 0.019441 0.974220 0.002845 0.003494
 0.181588 0.090729 0.090729 0.636954
 0.091378 0.002845 0.002845 0.902932
 0.003494 0.002845 0.990166 0.003494
 0.003494 0.902282 0.002845 0.091378
 0.815048 0.090729 0.002845 0.091378

MOTIF 2-AAAAACAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.886428 0.003329 0.003329 0.106914
 0.989254 0.003329 0.003329 0.004088
 0.937841 0.054742 0.003329 0.004088
 0.783602 0.003329 0.106155 0.106914
 0.886428 0.003329 0.003329 0.106914
 0.004088 0.885669 0.003329 0.106914
 0.886428 0.003329 0.003329 0.106914
 0.989254 0.003329 0.003329 0.004088

MOTIF 3-AACAATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.987251 0.003949 0.003949 0.004851
 0.987251 0.003949 0.003949 0.004851
 0.004851 0.864357 0.125942 0.004851
 0.987251 0.003949 0.003949 0.004851
 0.987251 0.003949 0.003949 0.004851
 0.004851 0.003949 0.125942 0.865258
 0.126843 0.251164 0.003949 0.618043
 0.126843 0.003949 0.003949 0.865258

MOTIF 4-TAATATTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.128458 0.064946 0.003949 0.802647
 0.987251 0.003949 0.003949 0.004851
 0.680654 0.249549 0.003949 0.065847
 0.065847 0.127557 0.003949 0.802647
 0.802647 0.003949 0.127557 0.065847
 0.065847 0.003949 0.249549 0.680654
 0.004851 0.003949 0.003949 0.987251
 0.802647 0.003949 0.064946 0.128458

MOTIF 5-GTACGTGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.006471 0.005269 0.981789 0.006471
 0.006471 0.005269 0.005269 0.982991
 0.820238 0.168022 0.005269 0.006471
 0.169224 0.819035 0.005269 0.006471
 0.169224 0.005269 0.819035 0.006471
 0.006471 0.168022 0.005269 0.820238
 0.006471 0.005269 0.981789 0.006471
 0.006471 0.168022 0.005269 0.820238

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/lov.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_lov/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	2.29 seconds
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