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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.37 C 0.13 G 0.13 T 0.37 

MOTIF 1-TATTTAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 5.0e-001
 0.002306 0.000812 0.087556 0.909326
 0.952837 0.044044 0.000812 0.002306
 0.005864 0.073527 0.000812 0.919797
 0.002306 0.044044 0.011396 0.942253
 0.113448 0.000812 0.174580 0.711160
 0.996069 0.000812 0.000812 0.002306
 0.234649 0.000812 0.762233 0.002306
 0.996069 0.000812 0.000812 0.002306

MOTIF 2-TATCTAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.6e-001
 0.102686 0.034154 0.000630 0.862531
 0.947056 0.007042 0.034154 0.011748
 0.019852 0.000630 0.000630 0.978889
 0.001789 0.962269 0.034154 0.001789
 0.114490 0.067786 0.000630 0.817094
 0.929903 0.034154 0.034154 0.001789
 0.894770 0.067786 0.034154 0.003289
 0.259311 0.603686 0.034154 0.102849

MOTIF 3-AATGGATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 8.8e-001
 0.963739 0.024548 0.010427 0.001286
 0.782647 0.000453 0.000453 0.216448
 0.059737 0.024548 0.000453 0.915262
 0.102089 0.000453 0.896173 0.001286
 0.001286 0.000453 0.996976 0.001286
 0.561148 0.210114 0.174498 0.054240
 0.069059 0.000453 0.000453 0.930035
 0.178904 0.048644 0.048721 0.723731

MOTIF 4-AGCTGAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.996015 0.000823 0.000823 0.002338
 0.002338 0.000823 0.976357 0.020482
 0.090136 0.774794 0.132732 0.002338
 0.046167 0.000823 0.000823 0.952187
 0.002338 0.132732 0.686429 0.178501
 0.864530 0.044652 0.000823 0.089995
 0.908359 0.044652 0.044652 0.002338
 0.055498 0.088621 0.809714 0.046167

MOTIF 5-GAGGACAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.002224 0.000783 0.702692 0.294301
 0.996210 0.000783 0.000783 0.002224
 0.002224 0.000783 0.977512 0.019481
 0.002224 0.125844 0.685435 0.186497
 0.687010 0.000783 0.167665 0.144542
 0.169106 0.827887 0.000783 0.002224
 0.662580 0.125844 0.084157 0.127419
 0.002224 0.000783 0.125844 0.871149

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/lola.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_lola/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	1.40 seconds
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