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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-ATCGATAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.5e-002
 0.993302 0.001768 0.001768 0.003162
 0.277880 0.001768 0.001768 0.718584
 0.003162 0.991907 0.001768 0.003162
 0.003162 0.001768 0.991907 0.003162
 0.924954 0.001768 0.070116 0.003162
 0.003162 0.001768 0.001768 0.993302
 0.993302 0.001768 0.001768 0.003162
 0.471401 0.070226 0.455211 0.003162

MOTIF 2-ASTGCAST STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.2e-001
 0.993584 0.001693 0.001693 0.003029
 0.003029 0.496971 0.496971 0.003029
 0.016579 0.001693 0.001693 0.980035
 0.189113 0.099888 0.707970 0.003029
 0.003029 0.707970 0.099888 0.189113
 0.980035 0.001693 0.001693 0.016579
 0.003029 0.496971 0.496971 0.003029
 0.003029 0.001693 0.001693 0.993584

MOTIF 3-CTCTGCWT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 3.0e-001
 0.001292 0.996693 0.000723 0.001292
 0.044446 0.012285 0.000723 0.942547
 0.001292 0.996693 0.000723 0.001292
 0.141129 0.000723 0.056585 0.801564
 0.287935 0.000723 0.598055 0.113288
 0.113107 0.884878 0.000723 0.001292
 0.343707 0.084606 0.040216 0.531470
 0.255443 0.156322 0.028654 0.559581

MOTIF 4-AAATAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.7e-001
 0.846018 0.001028 0.001028 0.151926
 0.576096 0.030835 0.161028 0.232041
 0.956363 0.001028 0.040771 0.001839
 0.001839 0.001028 0.001028 0.996105
 0.996105 0.001028 0.001028 0.001839
 0.980066 0.001028 0.017067 0.001839
 0.996105 0.001028 0.001028 0.001839
 0.001839 0.001028 0.001028 0.996105

MOTIF 5-AGAAATTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.938245 0.016300 0.016300 0.029155
 0.029155 0.016300 0.925391 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.938245 0.016300 0.016300 0.029155
 0.029155 0.016300 0.016300 0.938245
 0.029155 0.016300 0.016300 0.938245
 0.029155 0.016300 0.925391 0.029155

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/lilli.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_lilli/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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