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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.318 C 0.182 G 0.182 T 0.318 

MOTIF 1-ASGGAGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 2.4e-001
 0.992528 0.001997 0.001997 0.003477
 0.155507 0.533977 0.307039 0.003477
 0.003477 0.001997 0.991048 0.003477
 0.003477 0.001997 0.991048 0.003477
 0.992528 0.001997 0.001997 0.003477
 0.003477 0.001997 0.991048 0.003477
 0.840499 0.154026 0.001997 0.003477
 0.079370 0.001997 0.763126 0.155507

MOTIF 2-GATAAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.001617 0.000929 0.995838 0.001617
 0.875713 0.121741 0.000929 0.001617
 0.107849 0.071504 0.106905 0.713741
 0.961238 0.000929 0.000929 0.036905
 0.996526 0.000929 0.000929 0.001617
 0.001617 0.000929 0.919836 0.077619
 0.713540 0.036216 0.000929 0.249315
 0.749708 0.000929 0.157029 0.092335

MOTIF 3-AAACAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.917100 0.052849 0.022353 0.007697
 0.976598 0.000758 0.000758 0.021886
 0.911204 0.038963 0.000758 0.049076
 0.001319 0.996604 0.000758 0.001319
 0.877419 0.000758 0.091710 0.030113
 0.988611 0.000758 0.000758 0.009873
 0.835825 0.012275 0.116679 0.035221
 0.772258 0.038441 0.149335 0.039965

MOTIF 4-TAAATAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.8e-001
 0.028873 0.016582 0.016582 0.937964
 0.937964 0.016582 0.016582 0.028873
 0.937964 0.016582 0.016582 0.028873
 0.937964 0.016582 0.016582 0.028873
 0.028873 0.016582 0.016582 0.937964
 0.937964 0.016582 0.016582 0.028873
 0.937964 0.016582 0.016582 0.028873
 0.937964 0.016582 0.016582 0.028873

MOTIF 5-ATGCAGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.993849 0.001644 0.001644 0.002863
 0.002863 0.126810 0.252786 0.617541
 0.002863 0.027510 0.966764 0.002863
 0.002863 0.966764 0.001644 0.028729
 0.868682 0.001644 0.126810 0.002863
 0.002863 0.064127 0.930147 0.002863
 0.002863 0.930147 0.001644 0.065346
 0.806200 0.126810 0.001644 0.065346

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/lbe.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_lbe/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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