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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.265 C 0.235 G 0.235 T 0.265 

MOTIF 1-CATATGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.044788 0.912462 0.034984 0.007766
 0.877874 0.068929 0.034984 0.018213
 0.059596 0.171427 0.001147 0.767830
 0.822796 0.034984 0.102985 0.039235
 0.001294 0.001147 0.102766 0.894793
 0.023852 0.019378 0.898563 0.058206
 0.001294 0.962374 0.001147 0.035186
 0.975933 0.001147 0.007619 0.015302

MOTIF 2-AATTGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.914920 0.001253 0.008327 0.075500
 0.914920 0.008327 0.075338 0.001414
 0.001414 0.082531 0.145266 0.770789
 0.120259 0.001253 0.001253 0.877234
 0.001414 0.001253 0.995918 0.001414
 0.930479 0.001253 0.063457 0.004810
 0.969078 0.021180 0.008327 0.001414
 0.861875 0.021180 0.058392 0.058553

MOTIF 3-AGATACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.5e-001
 0.997800 0.000703 0.000703 0.000793
 0.063097 0.127603 0.787761 0.021539
 0.656916 0.113119 0.187614 0.042351
 0.063097 0.021449 0.000703 0.914751
 0.914685 0.083819 0.000703 0.000793
 0.083976 0.873003 0.042228 0.000793
 0.833353 0.083819 0.042328 0.040500
 0.668082 0.044711 0.092608 0.194599

MOTIF 4-ACACGTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.776320 0.056278 0.110887 0.056515
 0.056515 0.939558 0.001845 0.002082
 0.994229 0.001845 0.001845 0.002082
 0.002082 0.884949 0.110887 0.002082
 0.012493 0.001845 0.983580 0.002082
 0.002082 0.056278 0.001845 0.939795
 0.830402 0.001845 0.001845 0.165909
 0.056515 0.056278 0.830691 0.056515

MOTIF 5-AAAGAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.912204 0.001411 0.084794 0.001592
 0.870579 0.001411 0.043035 0.084975
 0.953962 0.001411 0.043035 0.001592
 0.001592 0.001411 0.953781 0.043217
 0.925577 0.001411 0.071421 0.001592
 0.978356 0.001411 0.018642 0.001592
 0.240876 0.001411 0.756122 0.001592
 0.168897 0.084928 0.702958 0.043217

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/kni.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_kni/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.53 seconds
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