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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.327 C 0.173 G 0.173 T 0.327 

MOTIF 1-ATKAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.568030 0.263024 0.167578 0.001368
 0.001368 0.000726 0.000726 0.997179
 0.001368 0.000726 0.593692 0.404213
 0.793434 0.204472 0.000726 0.001368
 0.283507 0.000726 0.714398 0.001368
 0.001368 0.000726 0.000726 0.997179
 0.244922 0.752984 0.000726 0.001368
 0.997179 0.000726 0.000726 0.001368

MOTIF 2-GWWCGWWC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.002533 0.001345 0.993589 0.002533
 0.433811 0.039309 0.108864 0.418016
 0.444458 0.001345 0.109301 0.444895
 0.056401 0.750906 0.001345 0.191347
 0.191347 0.001345 0.750906 0.056401
 0.444895 0.109301 0.001345 0.444458
 0.418016 0.108864 0.039309 0.433811
 0.002533 0.993589 0.001345 0.002533

MOTIF 3-CACACACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.029691 0.924855 0.015764 0.029691
 0.938782 0.015764 0.015764 0.029691
 0.029691 0.924855 0.015764 0.029691
 0.938782 0.015764 0.015764 0.029691
 0.029691 0.924855 0.015764 0.029691
 0.938782 0.015764 0.015764 0.029691
 0.029691 0.924855 0.015764 0.029691
 0.938782 0.015764 0.015764 0.029691

MOTIF 4-AAAAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.6e-001
 0.801265 0.073485 0.001073 0.124176
 0.929867 0.001073 0.018764 0.050296
 0.823006 0.130824 0.044148 0.002021
 0.807886 0.001073 0.087223 0.103817
 0.002021 0.001073 0.994884 0.002021
 0.974381 0.001073 0.022524 0.002021
 0.952582 0.001073 0.044324 0.002021
 0.995832 0.001073 0.001073 0.002021

MOTIF 5-GTATAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.229332 0.000944 0.734580 0.035143
 0.093132 0.000944 0.000944 0.904979
 0.992940 0.000944 0.000944 0.005171
 0.039521 0.076735 0.069814 0.813930
 0.851673 0.114478 0.000944 0.032905
 0.693476 0.076430 0.228316 0.001778
 0.996333 0.000944 0.000944 0.001778
 0.124281 0.016508 0.016508 0.842704

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/kay.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_kay/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.18 seconds
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