******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.28 C 0.221 G 0.221 T 0.28 MOTIF 1-GRTACATT STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001 0.001753 0.001383 0.921996 0.074868 0.307311 0.001383 0.558509 0.132797 0.050496 0.001383 0.001383 0.946738 0.777568 0.001383 0.001383 0.219667 0.001753 0.951641 0.044854 0.001753 0.908540 0.001383 0.044854 0.045224 0.001753 0.001383 0.044854 0.952011 0.045224 0.001383 0.001383 0.952011 MOTIF 2-GTGWGTGA STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001 0.035346 0.001081 0.924106 0.039467 0.058516 0.001081 0.069033 0.871370 0.097161 0.001081 0.866412 0.035346 0.611702 0.001081 0.015146 0.372072 0.001370 0.001081 0.996179 0.001370 0.001370 0.044987 0.001081 0.952562 0.035346 0.001081 0.962203 0.001370 0.900677 0.035057 0.062896 0.001370 MOTIF 3-GAGCGGGA STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001 0.152324 0.038715 0.807448 0.001513 0.996100 0.001194 0.001194 0.001513 0.017045 0.001194 0.942727 0.039034 0.184644 0.598485 0.064302 0.152569 0.001513 0.001194 0.995780 0.001513 0.001513 0.001194 0.995780 0.001513 0.001513 0.001194 0.980248 0.017045 0.920937 0.001194 0.001194 0.076676 MOTIF 4-YGMCGKCR STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 9.7e-001 0.028145 0.550749 0.027702 0.393404 0.028145 0.001657 0.942052 0.028145 0.472256 0.419513 0.001657 0.106574 0.054274 0.941968 0.001657 0.002100 0.002100 0.001657 0.941968 0.054274 0.106574 0.001657 0.419513 0.472256 0.028145 0.942052 0.001657 0.028145 0.393404 0.027702 0.550749 0.028145 MOTIF 5-AACTGAAA STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.0e+000 0.620997 0.304776 0.073024 0.001202 0.996901 0.000949 0.000949 0.001202 0.001202 0.783138 0.000949 0.214711 0.001202 0.210397 0.000949 0.787452 0.001202 0.000949 0.996647 0.001202 0.996901 0.000949 0.000949 0.001202 0.937168 0.060681 0.000949 0.001202 0.745194 0.252655 0.000949 0.001202 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/jing.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_jing/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 2.08 seconds ********************************************************************************