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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-CCCCACCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.2e-001
 0.001266 0.677981 0.130590 0.190164
 0.001266 0.739822 0.001066 0.257846
 0.001266 0.942027 0.055442 0.001266
 0.001266 0.996402 0.001066 0.001266
 0.996602 0.001066 0.001066 0.001266
 0.001266 0.737040 0.001066 0.260628
 0.001266 0.931744 0.001066 0.065924
 0.796538 0.001066 0.130590 0.071806

MOTIF 2-AAAAYGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 71 P= 2.6e-001
 0.731650 0.120084 0.064247 0.084019
 0.761889 0.086603 0.007969 0.143539
 0.937692 0.000588 0.000588 0.061132
 0.950579 0.012475 0.018418 0.018528
 0.077048 0.302693 0.047163 0.573096
 0.045555 0.000588 0.934544 0.019313
 0.981830 0.000588 0.009503 0.008079
 0.998126 0.000588 0.000588 0.000698

MOTIF 3-ATGCAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 3.0e-001
 0.995199 0.001506 0.001506 0.001788
 0.001788 0.001506 0.047180 0.949525
 0.001788 0.001506 0.949243 0.047462
 0.001788 0.812074 0.093001 0.093137
 0.598217 0.047180 0.124002 0.230601
 0.812208 0.001506 0.184497 0.001788
 0.995199 0.001506 0.001506 0.001788
 0.001788 0.001506 0.001506 0.995199

MOTIF 4-CTCCGCTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 6.5e-001
 0.098838 0.880187 0.020209 0.000766
 0.079211 0.000645 0.059526 0.860618
 0.000766 0.676634 0.099133 0.223467
 0.020330 0.844336 0.033551 0.101783
 0.039894 0.138161 0.762455 0.059489
 0.000766 0.879869 0.000645 0.118719
 0.020330 0.100436 0.000645 0.878589
 0.118339 0.033551 0.000645 0.847465

MOTIF 5-ACDCACAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 6.7e-001
 0.996950 0.000957 0.000957 0.001136
 0.001136 0.938687 0.059040 0.001136
 0.303042 0.000957 0.432241 0.263760
 0.001136 0.848708 0.000957 0.149199
 0.868771 0.129136 0.000957 0.001136
 0.001136 0.909529 0.088199 0.001136
 0.996950 0.000957 0.000957 0.001136
 0.001136 0.996771 0.000957 0.001136

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/jim.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_jim/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.77 seconds
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