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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.333 C 0.167 G 0.167 T 0.333 

MOTIF 1-AGCCCTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.2e-001
 0.937603 0.000718 0.000718 0.060962
 0.031244 0.000718 0.847449 0.120590
 0.090728 0.817827 0.000718 0.090728
 0.061057 0.924473 0.000718 0.013752
 0.061057 0.728242 0.119878 0.090823
 0.090728 0.119830 0.030484 0.758959
 0.090728 0.000718 0.847593 0.060962
 0.669132 0.030484 0.209657 0.090728

MOTIF 2-CGCCAYCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 2.4e-001
 0.037940 0.886928 0.000873 0.074259
 0.001739 0.037074 0.887045 0.074142
 0.001739 0.944462 0.000873 0.052927
 0.001739 0.763220 0.124581 0.110460
 0.960314 0.037074 0.000873 0.001739
 0.001739 0.631754 0.000873 0.365635
 0.037940 0.814408 0.073393 0.074259
 0.146546 0.000873 0.037074 0.815507

MOTIF 3-ATATTTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.5e-001
 0.941486 0.016113 0.016113 0.026288
 0.001767 0.048418 0.037668 0.912147
 0.872731 0.062751 0.062751 0.001767
 0.080986 0.000887 0.037668 0.880459
 0.096073 0.148726 0.028473 0.726728
 0.024033 0.000887 0.004264 0.970816
 0.001767 0.000887 0.995580 0.001767
 0.868230 0.000887 0.000887 0.129997

MOTIF 4-ATACCTAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.6e-001
 0.996293 0.000928 0.000928 0.001850
 0.001850 0.000928 0.000928 0.996293
 0.849388 0.039504 0.000928 0.110179
 0.001850 0.879427 0.000928 0.117794
 0.001850 0.995372 0.000928 0.001850
 0.071921 0.078205 0.078080 0.771794
 0.764339 0.078080 0.000928 0.156652
 0.045035 0.000928 0.078080 0.875956

MOTIF 5-AAAATCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.5e-001
 0.660371 0.001004 0.133390 0.205235
 0.933883 0.018241 0.023440 0.024436
 0.929145 0.042644 0.001004 0.027208
 0.995992 0.001004 0.001004 0.002000
 0.002000 0.001004 0.001004 0.995992
 0.002000 0.994996 0.001004 0.002000
 0.676127 0.001004 0.001004 0.321865
 0.995992 0.001004 0.001004 0.002000

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ind.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ind/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.53 seconds
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