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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-CTGACAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.3e-001
 0.001789 0.975827 0.001549 0.020836
 0.058453 0.020596 0.047816 0.873136
 0.094791 0.001549 0.901871 0.001789
 0.948847 0.047816 0.001549 0.001789
 0.001789 0.994874 0.001549 0.001789
 0.666948 0.094551 0.047816 0.190685
 0.014166 0.047816 0.936230 0.001789
 0.716107 0.094551 0.094551 0.094791

MOTIF 2-ATAAATYA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.8e-001
 0.957548 0.001285 0.001285 0.039882
 0.078668 0.001285 0.001285 0.918762
 0.954127 0.039682 0.004706 0.001485
 0.957548 0.039682 0.001285 0.001485
 0.995945 0.001285 0.001285 0.001485
 0.001485 0.001285 0.001285 0.995945
 0.079062 0.448980 0.001285 0.470673
 0.880365 0.078468 0.039682 0.001485

MOTIF 3-AAATATTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.024364 0.021091 0.021091 0.933455
 0.933455 0.021091 0.021091 0.024364
 0.024364 0.021091 0.021091 0.933455
 0.024364 0.021091 0.021091 0.933455
 0.024364 0.021091 0.930182 0.024364

MOTIF 4-CGAAATGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.076220 0.696095 0.224848 0.002837
 0.002837 0.002456 0.991869 0.002837
 0.918868 0.002456 0.075839 0.002837
 0.844743 0.002456 0.149964 0.002837
 0.739649 0.224848 0.002456 0.033047
 0.002837 0.002456 0.002456 0.992250
 0.076220 0.002456 0.918487 0.002837
 0.002837 0.075839 0.002456 0.918868

MOTIF 5-AACCCTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.992009 0.002533 0.002533 0.002926
 0.916343 0.002533 0.078198 0.002926
 0.002926 0.991616 0.002533 0.002926
 0.002926 0.991616 0.002533 0.002926
 0.002926 0.840285 0.153864 0.002926
 0.078591 0.078198 0.153864 0.689346
 0.764246 0.002533 0.002533 0.230689
 0.916343 0.002533 0.002533 0.078591

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/hth.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_hth/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n03.farnam.hpc.yale.internal
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FINALTIME:	1.06 seconds
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