********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-ATCGATAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 3.0e-001
 0.996999 0.000933 0.000933 0.001134
 0.001134 0.012797 0.000933 0.985135
 0.001134 0.968139 0.000933 0.029794
 0.058545 0.029593 0.910728 0.001134
 0.939635 0.029639 0.029593 0.001134
 0.001134 0.000933 0.000933 0.996999
 0.882062 0.029593 0.000933 0.087412
 0.611907 0.058437 0.236314 0.093342

MOTIF 2-TCGCCATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.045602 0.001428 0.089301 0.863669
 0.089609 0.775489 0.045294 0.089609
 0.089609 0.089301 0.819354 0.001736
 0.133758 0.731056 0.001428 0.133758
 0.001736 0.995100 0.001428 0.001736
 0.987017 0.001428 0.009819 0.001736
 0.001736 0.045294 0.001428 0.951542
 0.001736 0.951234 0.045294 0.001736

MOTIF 3-CCTAACGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.114839 0.734876 0.104550 0.045734
 0.001741 0.995086 0.001432 0.001741
 0.001741 0.089561 0.001432 0.907266
 0.995394 0.001432 0.001432 0.001741
 0.845060 0.019644 0.045426 0.089869
 0.134147 0.854265 0.001432 0.010156
 0.001741 0.001432 0.995086 0.001741
 0.045734 0.907028 0.045497 0.001741

MOTIF 4-CTCACACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 7.0e-001
 0.003918 0.750400 0.245011 0.000672
 0.000672 0.000553 0.000553 0.998223
 0.051613 0.913220 0.000553 0.034614
 0.991198 0.000553 0.000553 0.007697
 0.034669 0.673321 0.116395 0.175614
 0.860511 0.000553 0.000553 0.138384
 0.137211 0.638663 0.034550 0.189576
 0.000672 0.136761 0.058656 0.803911

MOTIF 5-ATGTACGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.912898 0.042732 0.042732 0.001638
 0.208827 0.001348 0.001348 0.788478
 0.001638 0.001348 0.995377 0.001638
 0.001638 0.001348 0.208537 0.788478
 0.995667 0.001348 0.001348 0.001638
 0.167309 0.788321 0.001348 0.043022
 0.043022 0.042732 0.622516 0.291729
 0.747226 0.001348 0.125501 0.125925

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/her.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_her/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	2.00 seconds
********************************************************************************