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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-GGAGGGGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.001940 0.001463 0.947482 0.049115
 0.191556 0.001463 0.710539 0.096442
 0.900783 0.048639 0.001463 0.049115
 0.001940 0.095966 0.805652 0.096442
 0.096442 0.001463 0.852904 0.049191
 0.001940 0.048639 0.947482 0.001940
 0.001940 0.001463 0.994657 0.001940
 0.001940 0.001463 0.994657 0.001940

MOTIF 2-CAGACACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.002476 0.993179 0.001868 0.002476
 0.873136 0.001868 0.122519 0.002476
 0.002476 0.001868 0.993179 0.002476
 0.993787 0.001868 0.001868 0.002476
 0.002476 0.786978 0.026801 0.183745
 0.993787 0.001868 0.001868 0.002476
 0.002476 0.811911 0.183137 0.002476
 0.570825 0.122519 0.062097 0.244559

MOTIF 3-SCGATAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.6e-001
 0.012029 0.506135 0.374505 0.107332
 0.027520 0.731133 0.027253 0.214095
 0.001087 0.000820 0.997006 0.001087
 0.997273 0.000820 0.000820 0.001087
 0.001087 0.000820 0.000820 0.997273
 0.891285 0.000820 0.000820 0.107075
 0.997273 0.000820 0.000820 0.001087
 0.107332 0.000820 0.890762 0.001087

MOTIF 4-ATTGAATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 8.8e-001
 0.910884 0.001312 0.086064 0.001740
 0.110505 0.001312 0.043688 0.844495
 0.001740 0.001312 0.043620 0.953328
 0.136249 0.043620 0.818391 0.001740
 0.910884 0.001312 0.086064 0.001740
 0.924476 0.072472 0.001312 0.001740
 0.086491 0.043620 0.001312 0.868576
 0.001740 0.001312 0.995209 0.001740

MOTIF 5-ACTTGACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 8.8e-001
 0.881878 0.077311 0.001181 0.039630
 0.008846 0.950343 0.001181 0.039630
 0.001565 0.153563 0.008461 0.836410
 0.055388 0.012489 0.039246 0.892877
 0.001565 0.077433 0.881372 0.039630
 0.950728 0.039246 0.008461 0.001565
 0.108631 0.659496 0.115744 0.116128
 0.751803 0.131133 0.001181 0.115883

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/gro.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_gro/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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