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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.319 C 0.181 G 0.181 T 0.319 

MOTIF 1-TACAGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 1.1e-002
 0.000545 0.072453 0.048093 0.878909
 0.975058 0.000311 0.000311 0.024321
 0.003743 0.977064 0.000311 0.018882
 0.986964 0.000311 0.012179 0.000545
 0.002815 0.000311 0.960608 0.036266
 0.005459 0.000311 0.005224 0.989007
 0.085290 0.040210 0.862086 0.012414
 0.689379 0.041996 0.220376 0.048250

MOTIF 2-AAAACGGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.901559 0.002347 0.091976 0.004118
 0.901559 0.002347 0.091976 0.004118
 0.991188 0.002347 0.002347 0.004118
 0.632096 0.002347 0.181893 0.183664
 0.004118 0.989416 0.002347 0.004118
 0.004118 0.002347 0.989416 0.004118
 0.004118 0.002347 0.989416 0.004118
 0.093747 0.181893 0.002347 0.722013

MOTIF 3-TAAATGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 6.5e-001
 0.001614 0.106633 0.000920 0.890833
 0.959228 0.000920 0.015460 0.024392
 0.915165 0.071282 0.000920 0.012633
 0.946881 0.036044 0.000920 0.016154
 0.096079 0.071282 0.019845 0.812793
 0.001614 0.019845 0.976927 0.001614
 0.119695 0.106633 0.059998 0.713674
 0.938005 0.036044 0.000920 0.025030

MOTIF 4-CTCGCTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.000784 0.997985 0.000447 0.000784
 0.000784 0.007509 0.000447 0.991260
 0.117330 0.600648 0.281238 0.000784
 0.171834 0.058692 0.751629 0.017845
 0.120431 0.878338 0.000447 0.000784
 0.034961 0.183352 0.000447 0.781240
 0.688708 0.120148 0.099932 0.091212
 0.710744 0.068691 0.017508 0.203057

MOTIF 5-ATGTGTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.6e-001
 0.754079 0.000886 0.038825 0.206210
 0.069333 0.000886 0.014892 0.914889
 0.115300 0.014892 0.868253 0.001555
 0.001555 0.014892 0.068664 0.914889
 0.035389 0.034721 0.928335 0.001555
 0.001555 0.068664 0.007357 0.922424
 0.015561 0.034721 0.914329 0.035389
 0.035389 0.826174 0.034721 0.103716

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/grau.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_grau/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.76 seconds
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