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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-CAAAGTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 3.0e-001
 0.000876 0.943892 0.000719 0.054513
 0.975575 0.000719 0.022830 0.000876
 0.975575 0.000719 0.000719 0.022987
 0.877657 0.111595 0.009872 0.000876
 0.000876 0.000719 0.997529 0.000876
 0.000876 0.000719 0.000719 0.997686
 0.085178 0.553056 0.159874 0.201892
 0.000876 0.997529 0.000719 0.000876

MOTIF 2-AACAACAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 6.7e-001
 0.904031 0.001481 0.001481 0.093008
 0.812679 0.138508 0.001481 0.047333
 0.001804 0.672042 0.001481 0.324673
 0.924893 0.001481 0.001481 0.072146
 0.995235 0.001481 0.001481 0.001804
 0.001804 0.949383 0.001481 0.047333
 0.989662 0.001481 0.007054 0.001804
 0.995235 0.001481 0.001481 0.001804

MOTIF 3-ATGGCTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.994259 0.001784 0.001784 0.002173
 0.002173 0.167159 0.001784 0.828884
 0.057032 0.001784 0.939010 0.002173
 0.222674 0.001784 0.773369 0.002173
 0.057032 0.884151 0.056643 0.002173
 0.002173 0.056731 0.001784 0.939311
 0.002173 0.001784 0.001784 0.994259
 0.057032 0.939010 0.001784 0.002173

MOTIF 4-AACTAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 8.8e-001
 0.750018 0.020220 0.209402 0.020359
 0.832732 0.039804 0.126688 0.000776
 0.135558 0.771639 0.041682 0.051121
 0.000776 0.039804 0.000637 0.958783
 0.934630 0.000637 0.000637 0.064096
 0.773448 0.087959 0.118233 0.020359
 0.919553 0.039867 0.039804 0.000776
 0.133131 0.245969 0.000637 0.620263

MOTIF 5-AAGGAAAM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 8.8e-001
 0.963066 0.001087 0.034522 0.001325
 0.933871 0.001087 0.007482 0.057560
 0.001325 0.067631 0.873485 0.057560
 0.001325 0.001087 0.962829 0.034759
 0.882249 0.034522 0.014928 0.068301
 0.996501 0.001087 0.001087 0.001325
 0.889059 0.001087 0.108529 0.001325
 0.319630 0.531294 0.013365 0.135711

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/gl.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_gl/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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